PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13920.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 152aa    MW: 16676.1 Da    PI: 9.2487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.41.7e-15266259323
             GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                      + l+yy a fd++ +a+l ++s +r+kvE++ ++rei+n+va egaer+erhe+++  r+r+e+ G
  OGLUM04G13920.1   2 HYLRYYDAAFDAVdAAGLLETSPARAKVEEM-FAREIRNAVAFEGAERFERHESFAGRRRRMEDGG 66 
                      679**********9999**************.******************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.9E-13266IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MHYLRYYDAA FDAVDAAGLL ETSPARAKVE EMFAREIRNA VAFEGAERFE RHESFAGRRR  60
RMEDGGGLQW GSKAEEKCLL PSSSWARRPR RQPSPPVSLR PDGSLPPAVA AAPLVLPLPR  120
ASAAEPPRCA PMPPTAAPLV LPPPLPTEKE RI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14760RFERHESFAGRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064480.0AL606448.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551790.0CR855179.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152K17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZLE01e-102A0A0D9ZLE0_9ORYZ; Uncharacterized protein
STRINGOGLUM04G13920.11e-102(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2600155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-06GRAS family protein