PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G13380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 592aa MW: 65958 Da PI: 6.3516 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.2e-24 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + OGLUM04G13380.2 126 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 216 99*****************************7556666.59************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r OGLUM04G13380.2 217 SGELRVGVRR 226 999*****97 PP | |||||||
2 | Auxin_resp | 101.9 | 8.4e-34 | 252 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+ ++ + W +S W+sLk OGLUM04G13380.2 252 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 337 789*************************************************************987522267889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-45 | 110 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-41 | 123 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.82E-22 | 124 | 226 | No hit | No description |
PROSITE profile | PS50863 | 11.533 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 126 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-20 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.3E-32 | 252 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.8E-6 | 377 | 465 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.62 | 429 | 521 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.77E-11 | 431 | 507 | No hit | No description |
Pfam | PF02309 | 1.0E-7 | 477 | 520 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ 60 QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK 120 CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH 180 IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS 240 SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF 300 EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL 360 DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFDVDSDQI SQPSNGNKSD APGTSSERSP 420 LESQSRQVRS CTKVIMQGMA VGRAVDLTKL NGYGDLRSKL EEMFDIQGDL CPTLKRWQVV 480 YTDDEDDMML VGDDPWDEFC SMVKRIYIYS YEEAKLLAPK SKLPVIGDTI KLSSMNSSHE 540 SVDLDNHASC QEVPKTGKTA WKRHSGKCMP FQIVLCFGRS LGVLVWCPDL VD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldx_A | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
4ldx_B | 0.0 | 1 | 362 | 1 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064925 | 0.0 | AK064925.1 Oryza sativa Japonica Group cDNA clone:J013000N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636800.1 | 0.0 | auxin response factor 9 isoform X3 | ||||
Swissprot | Q0JCZ4 | 0.0 | ARFI_ORYSJ; Auxin response factor 9 | ||||
TrEMBL | A0A0D9ZL55 | 0.0 | A0A0D9ZL55_9ORYZ; Auxin response factor | ||||
STRING | ORUFI04G14900.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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