PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G13050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 173aa MW: 19540.9 Da PI: 6.7321 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.4e-07 | 99 | 122 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+ e Cr++++ C++ ++C+FaH+ OGLUM04G13050.1 99 YGVEVCRDYLK-NMCNR-ESCRFAHP 122 899********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.408 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.5 | 3 | 22 | No hit | No description |
SMART | SM00356 | 0.73 | 28 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.291 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.86 | 33 | 50 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-4 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 98 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.005 | 104 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVCRDFTRGR CSRSANECRF LHHSPLEDCA IVCQDFLRGR CDRKSCRYSH VMAHPMPPPM 60 RDIPMQYPDM VYMPPPAPLG VPMMMPPPSA PAAFSGNNYG VEVCRDYLKN MCNRESCRFA 120 HPDLNNEFAV ILSEENAIDL PVAFTIHLQA QILLDKVNIE CPALLPLLPL CCC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060634 | 0.0 | AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636418.1 | 9e-89 | zinc finger CCCH domain-containing protein 28 isoform X2 | ||||
Swissprot | Q0JD07 | 5e-89 | C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | A0A0E0P9I1 | 1e-123 | A0A0E0P9I1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G14690.4 | 1e-123 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10904 | 19 | 22 |
Publications ? help Back to Top | |||
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