PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10170.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 956aa    MW: 107252 Da    PI: 6.3196
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.12.3e-55111272117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np f
  OGLUM04G10170.1  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCF 104
                      67779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrrc+w+Le ++e+ivlv+y+ev
  OGLUM04G10170.1 105 QRRCFWMLEPAYEHIVLVQYREV 127
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-4713126IPR005559CG-1 DNA-binding domain
PfamPF018333.4E-7404485IPR002909IPT domain
Gene3DG3DSA:2.60.40.107.5E-6404494IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.25E-16404486IPR014756Immunoglobulin E-set
SuperFamilySSF484039.79E-16435479IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.79E-16599696IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-15599695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.212601693IPR020683Ankyrin repeat-containing domain
CDDcd002046.11E-9606693No hitNo description
PfamPF127961.1E-7617695IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-4634663IPR002110Ankyrin repeat
PROSITE profilePS5008810.927634666IPR002110Ankyrin repeat
SMARTSM002481800673702IPR002110Ankyrin repeat
SMARTSM0001527754776IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529755784IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.01E-6810860IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95813842IPR000048IQ motif, EF-hand binding site
SMARTSM0001519814834IPR000048IQ motif, EF-hand binding site
PfamPF006120.021815833IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64836864IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-5837857IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTESSLEQS IEVRRVDNSN STNKSGLNRA LKQIVEQLSL GDDEDDDYIH QAQPFDFITN  240
IEAPDRQRDA SRNVSGGSQA KQIRAEEMQN GLGRGIPSSW EDSTPHYPQN SEYQPPGSLY  300
NSDMQQISAA KRFLLETEDS IDSPSYNYVP REEGNNGTNT LSVHDYSLQS SLNPDWKKTA  360
PLTLQSNLYG SEIPSLLLDH GQFESLSSGE NTRLILGQNP RFSIREVSPE WTYCYEITKV  420
IITGDFLCDP SSSCWAVMFG DSEVPAEIVQ AGVLRCHTPL HSSGKLTICV TSGNREICSE  480
VKDFEFRAKS TASSFLDISP SSRSLKSSEE LLLLAKFVRM LLCENGSHAN SNGDPQSVQC  540
PKLKMNDEHW QRLIDELKGG CENPLNVSDW IMEELLKSKL QQWLSVKLQG YDGIACSLSK  600
HEQGIIHLIS ALGYEWALSS ILSADVGINF RDTNGWTALH WAAYFGREKM VAALLAAGAS  660
APAVTDPTAQ DPVGKTAAFL ASEWGHLGLA AYLSEVSLTS YLASLTIQES DTSKGSAAAE  720
AERAVESISQ RNAQLHGGTE DELSLKDSLA AVRNAAQAAA RIQNAFRAFS FRKRQQKTAR  780
LKDEYGMTQE DIDELAAASR SYYQSLLPNG QFYDKAAVSI QKKFKGWKGR RHFLNMRRNA  840
VKIQAHVRGH QVRKKYKTFV STVSVLEKVI LRWRRKGHGL RGFRAEQTAM AEAEEDDEDD  900
DDDDFNDDEA VKVFRRQKVD ESVKEAMSRV LSMVDSPEAR MQYRRMLEEF RQATAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A0D9ZJZ70.0A0A0D9ZJZ7_9ORYZ; Uncharacterized protein
STRINGOGLUM04G10170.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-149Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains