PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28324 Da    PI: 6.9468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.6e-131153244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     rie+  +r + f kR++g+ KKAe L vLCda v  +++s +g
  OGLUM04G10110.1 11 RIEDRVRRGICFRKRLAGLEKKAEKLAVLCDAHVGFVVLSCSG 53
                     8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-10264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.913253IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-16480IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-10424IPR002100Transcription factor, MADS-box
PfamPF003191.2E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEKLAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATIENI VERYEHSQAA QKGVHGRCIL QKRKSKDFQV LKETIDKGPI NDDMRPIDEK  120
DISTLNMDQI SQIEILLEDE LRWTRARKVV ADRIARLQKK VQKKPATAET ESNSTEMPSD  180
HEKKQVAGGS QQSAEEEEEE EEEMEVVLRH RLSLGTGDRD DGGGGAAEQR HRTTPPPPVD  240
LNVPCRDAGQ LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-107AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-153truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0D9ZJZ10.0A0A0D9ZJZ1_9ORYZ; Uncharacterized protein
STRINGOGLUM04G10110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1509655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-19AGAMOUS-like 79