PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G09730.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 354aa    MW: 36944.4 Da    PI: 4.7965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G09730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10138182655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  OGLUM04G09730.1 138 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 182
                      568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-12130183No hitNo description
PROSITE profilePS5088815.294132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-12138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG GVGGGDDRMQ EWQNNCEGGG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDGDNSATRK RRDRSKTIVS ERKRRVRMKE KLYELRALVP NITKMDKASI IADAVVYVKD  180
LQAHARKLKE EVAALEEARP IRPPPPSAAA QRPQRQPRRV AAAAAQLARA ADAAAVTTAA  240
AAPHGARVAH VGAAQVGEGQ FFVTVECEPA AAAARGGGGG VAAPVCAAVE SLSCFTVESS  300
TVGCSPDRVV ATLTLKVSEA EEDVSAISEC TVKLWVMAAL LKEGFRPQPT VQIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144KRRDRSKTIVSERKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350400.0CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634338.11e-174transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D9ZJV40.0A0A0D9ZJV4_9ORYZ; Uncharacterized protein
STRINGOGLUM04G09730.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-21FER-like regulator of iron uptake