PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08130.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 280aa    MW: 31818.1 Da    PI: 9.6215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-1610861796
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k ++++++++GW +F + +g+  gD+v+F+++g+  f  +++v
  OGLUM04G08130.1 10 RIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDRSGVFFGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 86
                     69*********555567889999************..*******************************9986666..5555 PP
2B378.66.4e-25174268185
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...........-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...........rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvF 82 
                      ++k++++++vl++++l+l ++f+e++ + +e+s+tl++ d+++           rsWev+   r+++++ y+l++GW++F+++ng+++gD++vF
  OGLUM04G08130.1 174 WIKKEINEYVLERCILSLARTFCESIALAEESSITLMMIDTTStqgdqggssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCVF 265
                      789*************************************99999****************..9999999************************ PP

                      EE- CS
               B3  83 kld 85 
                      ++ 
  OGLUM04G08130.1 266 TVL 268
                      954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.592190IPR003340B3 DNA binding domain
SMARTSM010193.7E-9390IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-17790IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-17991IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-131082IPR003340B3 DNA binding domain
CDDcd100173.29E-151087No hitNo description
SuperFamilySSF1019361.96E-14170278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-17171278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.083174280IPR003340B3 DNA binding domain
PfamPF023623.6E-14174269IPR003340B3 DNA binding domain
SMARTSM010190.0013175276IPR003340B3 DNA binding domain
CDDcd100171.95E-7179266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHISLPFLQR IPDKFVRDYI TGENLNSNMA IILSPLGKSW RVELDKDRSG VFFGGGWLQF  60
LSFHGISRGD VVIFRYEGNL VFKISVFGPN GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK  120
CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG RTSDRETKRM RKTRSVYEIG PRSWIKKEIN  180
EYVLERCILS LARTFCESIA LAEESSITLM MIDTTSTQGD QGGSSSSRSW EVTGRRYKDA  240
CYLLGAGWRR FCEDNGVRSG DVCVFTVLDT SLWRVDIERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-161AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-161AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-161CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-161CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0D9ZJ770.0A0A0D9ZJ77_9ORYZ; Uncharacterized protein
STRINGOGLUM04G08130.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-14B3 family protein