PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08100.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 142aa    MW: 14370.2 Da    PI: 7.5092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.2e-1620114399
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      kvl+ps+  k   +++  + a++   gg  ++  t ++ ++ g+ W+v + +r ++g+ +l++GW eF+ a+gL +g fvv+++ g  ++ l v
  OGLUM04G08100.1  20 KVLVPSSFRK---MRICDELAAQLgvGGGAPRAATARVASPLGKAWDVGV-VRDGDGGAFLGRGWAEFAAAHGLGVGWFVVLRHGGGGGGVLAV 109
                      5665555544...578899998889966667889****************.577777789***********************99989999999 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f++
  OGLUM04G08100.1 110 EAFDT 114
                      99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1320117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-1220117IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-122099No hitNo description
PfamPF023625.7E-1320114IPR003340B3 DNA binding domain
PROSITE profilePS508639.61559115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGSRGDHGGG GGAARATQLK VLVPSSFRKM RICDELAAQL GVGGGAPRAA TARVASPLGK  60
AWDVGVVRDG DGGAFLGRGW AEFAAAHGLG VGWFVVLRHG GGGGGVLAVE AFDTTCCLRE  120
FGAPPAAHFY FALEAFSHDG EC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-126CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-126CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669670.13e-37putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS752e-58Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0D9ZJ747e-94A0A0D9ZJ74_9ORYZ; Uncharacterized protein
STRINGOGLUM04G08100.11e-94(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187