PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G00550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 227aa MW: 24037.2 Da PI: 7.6732 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 40.7 | 8.4e-13 | 146 | 182 | 23 | 59 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaa 59 vsvPs+slfk+vtvrCGhC++ll vn+ ++a OGLUM04G00550.1 146 EVSVPSSSLFKTVTVRCGHCSNLLPVNIGGLLLPTSA 182 69*************************9887665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-11 | 145 | 182 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVDPTSRMRI RPARDGPHCG GHRRLRRQRS WAAASEEEHP SSRSDEQSEE ADEDGDGNAE 60 AVGAAVLLFS PPPPAVAAAT LLLFPSSDEA AAAWEKPRRP SPVAWNLLLQ FIKAGFYAKA 120 SPSFPEFPPN KEVPFQKGCS GHKQVEVSVP SSSLFKTVTV RCGHCSNLLP VNIGGLLLPT 180 SAAATVATAP PPPSPPPPPP AAHFPHSLNL APPANPPHHH SLLVLAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066836 | 1e-163 | AK066836.1 Oryza sativa Japonica Group cDNA clone:J013088I01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9ZGE9 | 1e-160 | A0A0D9ZGE9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G00550.1 | 1e-161 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18934 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 3e-10 | YABBY family protein |