PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G41320.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 391aa MW: 42220.2 Da PI: 7.2983

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G41320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6.1e-31	202	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ OGLUM03G41320.1 202 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 260 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	196	262	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-30	199	262	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	200	262	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	201	261	IPR003657	WRKY domain
Pfam	PF03106	8.8E-26	203	260	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPPPMPQAP 60 HQYYPAPQIT IPYHHHHHHG ELRRPTTIAY TDAPVPFETA GPPSTVVDSY HHLTPGDAGY 120 GMPRPLALQI SQHALCGGGD VVMGSGGAGA ADDGEEAIRI SPLTPSAHHQ MMKRKNEVKK 180 VVCIPAPPAT SSRGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCMARKQVE 240 RSRSDPNMLV ITYTAEHNHP WPMQRNVLAG YARSHHSTHA TASSSRHKQQ QQQQTNQLQP 300 ALITSSSSSS SSPFNLYADV VLGGQQANMM MTTTEGAGTG LGIQPSAADE VFAELEELEP 360 DNPTMINANM QVYSTTSRPG VSSYDHQWHK F

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPPPMPQAP  60
HQYYPAPQIT IPYHHHHHHG ELRRPTTIAY TDAPVPFETA GPPSTVVDSY HHLTPGDAGY  120
GMPRPLALQI SQHALCGGGD VVMGSGGAGA ADDGEEAIRI SPLTPSAHHQ MMKRKNEVKK  180
VVCIPAPPAT SSRGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCMARKQVE  240
RSRSDPNMLV ITYTAEHNHP WPMQRNVLAG YARSHHSTHA TASSSRHKQQ QQQQTNQLQP  300
ALITSSSSSS SSPFNLYADV VLGGQQANMM MTTTEGAGTG LGIQPSAADE VFAELEELEP  360
DNPTMINANM QVYSTTSRPG VSSYDHQWHK F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-24	175	262	2	79	Disease resistance protein RRS1
5w3x_D	4e-24	175	262	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109795	0.0	AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630180.1	0.0	uncharacterized protein LOC4334831
Swissprot	O64747	2e-55	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0D9ZG06	0.0	A0A0D9ZG06_9ORYZ; Uncharacterized protein
STRING	OGLUM03G41320.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	5e-55	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]