PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G36280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 337aa MW: 34054.4 Da PI: 6.9661 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115 | 9.8e-36 | 46 | 157 | 5 | 105 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssasn 84 +drhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ ++ + ++s++++++ OGLUM03G36280.1 46 RDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQQQQQ 135 8************************************************************8888876643321....2223323333333333 PP TCP 85 sssgkaaksaa.kskksqksaa 105 s+++ ++s+ +sk s+k+ + OGLUM03G36280.1 136 LSNKSGCSSTSeTSKGSDKEVT 157 3333333333323333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.004 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-34 | 46 | 153 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRDRHS KVYTAKGIRD 60 RRVRLSVATA IQFYDLQDRL GFDQPSKAIE WLINAASPAI DTLPSLDPAA FAAIPHAAAA 120 DAAPTRQRSQ QQQQQLSNKS GCSSTSETSK GSDKEVTVAS APAQAASFTE LLIAGVAASS 180 AGGGAIGNGA DCVGIAHPGK GGAEGASTYG FSAASSFGDA PPIGMVPAPP FNFSAPGADM 240 AAHYSLAQDQ LAAPPPPAGG DYNLNFSMSS GFLGANRGTL QSNSPSNMSG HHHHHHQQQL 300 QRLDGSTISF LLGHAAAAAH PAASEGQITS TAALQLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-26 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-26 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629084.1 | 1e-176 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-177 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A0D9ZE28 | 0.0 | A0A0D9ZE28_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI03G38070.1 | 1e-177 | (Oryza rufipogon) | ||||
STRING | ORGLA03G0335700.1 | 1e-177 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 5e-30 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |