PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G35830.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 501aa MW: 54907.1 Da PI: 6.4571

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G35830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	4.8e-08	50	82	59	89
FAR1 59 rtgCkaklkvkkek..dgkwevtkleleHnHel 89 + C+a+++v k++ gkw+v+kl+ eHnHe+ OGLUM03G35830.1 50 EERCRAMMEVVKKDavGGKWRVSKLVVEHNHEV 82 568***99888889*************97 PP
2	FAR1	28.7	4.3e-09	112	174	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................t 48 fY Y+++vGF+ r+ ++++s ng +++++f Cs+ ++++++k+ OGLUM03G35830.1 112 FYYGYGQRVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqdgaaG 174 9***********************************999999988877777765555555441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-5	50	82	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.0E-6	112	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV 60 KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EVAAAVPVMG MEFDSVHAAK GFYYGYGQRV 120 GFKARTGSNR RSVGNGVMIM QRFLCSRGNY ANRRNKANGL DELKEEEVQD GAAGKRKRGA 180 NNKARNRNPV KNNSEVIEVE SSAEKGVGTS VPNNGQDTRK MRGSKRGRTK KDVTEKDEKP 240 VVELEAEKED EVVAQDGDDV EEQKGEGEEE MEEEVQVEVQ EKRGRGRPRK ADAEGNALQA 300 RVLRELGLRA SQYTNEERKK IVSKYLSKRQ SRPVSARPAK IASRQALAER RKRGDGGRFL 360 ASEGLTQPSE RRSKRLEKQN LKKEDKGESL PEPEEAKVPL RVDPPTISND IPNHLRTPTS 420 QFLAPSHIMQ GFPGISPFGQ EPAPAPLQQP HLQQPPFHSG PQIPQAPPPD IQSLQFLSSN 480 PQLGHQATDQ SQYTIPVWDF L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV  60
KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EVAAAVPVMG MEFDSVHAAK GFYYGYGQRV  120
GFKARTGSNR RSVGNGVMIM QRFLCSRGNY ANRRNKANGL DELKEEEVQD GAAGKRKRGA  180
NNKARNRNPV KNNSEVIEVE SSAEKGVGTS VPNNGQDTRK MRGSKRGRTK KDVTEKDEKP  240
VVELEAEKED EVVAQDGDDV EEQKGEGEEE MEEEVQVEVQ EKRGRGRPRK ADAEGNALQA  300
RVLRELGLRA SQYTNEERKK IVSKYLSKRQ SRPVSARPAK IASRQALAER RKRGDGGRFL  360
ASEGLTQPSE RRSKRLEKQN LKKEDKGESL PEPEEAKVPL RVDPPTISND IPNHLRTPTS  420
QFLAPSHIMQ GFPGISPFGQ EPAPAPLQQP HLQQPPFHSG PQIPQAPPPD IQSLQFLSSN  480
PQLGHQATDQ SQYTIPVWDF L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	289	KRGRGRPRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC084748	0.0	AC084748.11 Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630920.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_015630921.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
TrEMBL	A0A0D9ZDW0	0.0	A0A0D9ZDW0_9ORYZ; Uncharacterized protein
STRING	OGLUM03G35830.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-09	FAR1 family protein