PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G35430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 351aa MW: 38226.8 Da PI: 6.3462 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 263 | 297 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+ e+ LA+ +gL+++q+ +WF N+R ++ OGLUM03G35430.1 263 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 297 669*****************************885 PP | |||||||
2 | ELK | 37.6 | 4.8e-13 | 217 | 238 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLlrKY+g+Lg+L+q Fs OGLUM03G35430.1 217 QLKHQLLRKYGGSLGDLRQVFS 238 59*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.6E-18 | 81 | 125 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-18 | 82 | 121 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-25 | 136 | 188 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-19 | 146 | 186 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.9E-8 | 217 | 235 | IPR005539 | ELK domain |
SMART | SM01188 | 2.3E-5 | 217 | 238 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.324 | 217 | 237 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.503 | 237 | 300 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-18 | 239 | 304 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-11 | 239 | 304 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-13 | 240 | 300 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-27 | 242 | 300 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.0E-17 | 257 | 296 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 275 | 298 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGHDGHHHGG 60 GGGAAAAAAV QGQVSPAGAE AAVKAEIMSH PEYSALLAAY LGCKKVGAPP DVLTKLTAVP 120 AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIQ EAAEFFSRVE 180 TQLDSLADSN CEGTGSSEEE QDTSCPEAEE IDPSDKQLKH QLLRKYGGSL GDLRQVFSKR 240 TKKGKLPKEA RQKLLHWWEL HYKWPYPSEM EKMTLAQTTG LDQKQINNWF INQRKRHWKP 300 TPVAGTAFPT MEAAGGGFRH SGHGGGLAAA AALPLYMGKP FVVDGMYRLG S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00671 | PBM | Transfer from GRMZM2G135447 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028884 | 0.0 | AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879466.1 | 0.0 | homeobox protein knotted-1-like 8 isoform X1 | ||||
Swissprot | Q10ED2 | 0.0 | KNOS8_ORYSJ; Homeobox protein knotted-1-like 8 | ||||
TrEMBL | A0A0D9ZDR0 | 0.0 | A0A0D9ZDR0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G35430.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-72 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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