PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G35130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 392aa MW: 40241.3 Da PI: 6.9227 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 121 | 174 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OGLUM03G35130.1 121 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 174 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.53E-16 | 118 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 119 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 121 | 174 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 122 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MLQRNLPNLS LRISPPAVSS AAAPVSSGTP TTAARTTLPT GVITDAEGGG EVAAFFGNPS 60 SGSEPPGLSL GLGPTTPAHA DAGGGRHGDH HLQPQGCAPF KRAAARASQL PAGSKRSVRA 120 PRMRWTTALH ARFVHAVELL GGHERATPKS VLELMNVKDL TLAHVKSHLQ MYRTVKSTDR 180 SSHIASGEAQ LQQQAGMEVA MEAAAGGGGN GGGGGGGVVL PMMPACDDMV GICSSPAPPA 240 AATSSAAAYF LCATTTSTAT APLAVVPSPP APTIPTRRTD QTPVLEKGVA IVDSLHRCQK 300 HNYSPVLQDA LHQGAEEDHL ITGNLPMGGA SAQASIEAMA TTNSSSPASS SPSLASLEQL 360 LPEDSFAPNL EISLGRQNWN MDHPEELSLK YL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 122 | 176 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 122 | 176 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 122 | 176 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 122 | 176 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 122 | 176 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108408 | 0.0 | AK108408.1 Oryza sativa Japonica Group cDNA clone:002-142-G11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629095.1 | 0.0 | transcription factor LUX | ||||
TrEMBL | A0A0D9ZDM6 | 0.0 | A0A0D9ZDM6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G35130.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 2e-39 | G2-like family protein |