PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34610.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 817aa    MW: 88119.4 Da    PI: 7.1501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92.1e-28572628259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  OGLUM03G34610.1 572 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 628
                      8****************************************.***************7 PP
2WRKY102.23e-32717775159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  OGLUM03G34610.1 717 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 775
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.128.201.4E-13198IPR012674Calycin
SuperFamilySSF508144.87E-53698IPR011038Calycin-like
PfamPF122047.2E-1369250IPR022017Domain of unknown function DUF3598
SuperFamilySSF508143.75E-30113255IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.5E-42114255IPR012674Calycin
PROSITE profilePS5081122.768566630IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-26567630IPR003657WRKY domain
SuperFamilySSF1182908.11E-23570630IPR003657WRKY domain
SMARTSM007749.8E-31571629IPR003657WRKY domain
PfamPF031061.0E-21572628IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-34702777IPR003657WRKY domain
SuperFamilySSF1182901.16E-27709777IPR003657WRKY domain
PROSITE profilePS5081136.059712777IPR003657WRKY domain
SMARTSM007744.4E-36717776IPR003657WRKY domain
PfamPF031065.6E-24718775IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MFTVDKYQQV GFFQEEKAFA LRYQTAGMLE TVLRAGVLGE DDTGEESPKN LKIPSRKPSI  60
VCENCLYSRE GNGRVRAFHI MDPKGVLDML IIFHEKQGSE VPLMYSSDDA DITNSDRIAP  120
LLGRWEGRSV TKRSGVYGAT LSEADTVVLL EKDRNGQLIL DNMSAKSGSS TTTTVHWTGS  180
ANNNLLQFDG GYEMTLLPGG MYMGYPTDIG KIVNDMDSFH LEFCWMESPG KRQRLVRTYD  240
SAGLAVSSTY FFETKRLSSL KPHHHLRRRV GDHGRTPDLS NANRVAGEGE GGDRFRRRRV  300
AAVTAAAIDR AKSPEEGDSF RWFWKYSAQA VGASQSNPNT SRSDPLSWSA AVVVIDREAL  360
PLHKQRKLTR AAAAAMADRR RSDGGGGGGG MQQQPFTSPG QERVFDGGGV PGQVAAPYGS  420
DFDQSSYMAL LAAGAVGVGV GVQPTAAPWA VEEDVAAAPP GISLAPQFSM ANYAPPPSYQ  480
HPATLVSPPL AAGLHPYPPY LHGVDAPPPQ WPPRPAPPPS FSVLDLAAAA APHEQRHSMQ  540
QLLLRAAAFG GGMHAAAAPA PAAAAAIEQP AKDGYNWRKY GQKQLKDAES PRSYYKCTRD  600
GCPVKKIVER SSDGCIKEIT YKGRHSHPRP VEPRRGGAAS SSSSTMAAGT DHNAGAAADD  660
AAAADEDDPS DDDDTLLHED DDDGEEGHDR GVDGEVGQRV VRKPKIILQT RSEVDLLDDG  720
YRWRKYGQKV VKGNPRPRSY YKCTADGCNV RKQIERASAD PKCVLTTYTG RHNHDPPGRP  780
PAAANLQMPG PAAMSLAGGG TAHQQPSGGA HQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1161255103356BFA1
5yvf_B1e-1161255103356BFA1
5yvf_C1e-1161255103356BFA1
5yvf_D1e-1161255103356BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630965.10.0probable WRKY transcription factor 58
TrEMBLA0A0D9ZDG00.0A0A0D9ZDG0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G34610.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-35WRKY DNA-binding protein 4