PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G29200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 320aa    MW: 33538 Da    PI: 4.9273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G29200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15171216555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  OGLUM03G29200.1 171 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 216
                      8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.355166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-19170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-17171220No hitNo description
PfamPF000104.3E-13171216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDDSSLFLQW VVSTLQHQDP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASSCRSTG NVGGGGGIGL AVAVDEHGGW SRSPNPGARP PSGGCGSNNL PLMSWDFSAA  120
SVAVQVQPNG GGSGGAPEMA YGSPPAAGGS TTRKTSAPTA AAAAAYAQLE HVVAERKRRE  180
KINQRFMELS AVIPKLKKMD KATILSDAAS YIRELQEKLK ALEEQAAARV TEAAMATPSP  240
ARAMNHLPVP PEIEVRCSPT NNVVMVRIHC ENGEGVIVRI LAEVEEIHLR IINANVMPFL  300
DQGATMIITI AAKASSSLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14169225763Transcription factor MYC2
5gnj_B6e-14169225763Transcription factor MYC2
5gnj_E6e-14169225763Transcription factor MYC2
5gnj_F6e-14169225763Transcription factor MYC2
5gnj_G6e-14169225763Transcription factor MYC2
5gnj_I6e-14169225763Transcription factor MYC2
5gnj_M6e-14169225763Transcription factor MYC2
5gnj_N6e-14169225763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467180.0AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-149LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0D9ZBD90.0A0A0D9ZBD9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G29200.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-24bHLH family protein