PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 884aa    MW: 96189.2 Da    PI: 6.545
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1858115457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OGLUM03G27880.1  58 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 115
                      6789****************************************************97 PP
2START174.37.5e-552064132204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  OGLUM03G27880.1 206 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIEL 298
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  OGLUM03G27880.1 299 IYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 392
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  OGLUM03G27880.1 393 LYESPKILAQKMTIAALRHIR 413
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.25652116IPR001356Homeobox domain
SMARTSM003892.7E-1554120IPR001356Homeobox domain
SuperFamilySSF466891.54E-1656119IPR009057Homeodomain-like
CDDcd000865.59E-1657117No hitNo description
PfamPF000461.1E-1558115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-1859115IPR009057Homeodomain-like
CDDcd146861.89E-6109148No hitNo description
PROSITE profilePS5084827.274196396IPR002913START domain
CDDcd088752.71E-69200416No hitNo description
Gene3DG3DSA:3.30.530.204.1E-24204396IPR023393START-like domain
SMARTSM002342.3E-47205415IPR002913START domain
SuperFamilySSF559615.63E-39206416No hitNo description
PfamPF018521.3E-52206413IPR002913START domain
SuperFamilySSF559617.97E-5453537No hitNo description
SuperFamilySSF559617.97E-5567640No hitNo description
PfamPF086701.2E-51741883IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MTRRRPWPWL LASAEAGEEG EGSTGMAAAM VAAVHGVGRQ DRSSPGGGGA PQVDTGKYVR  60
YTPEQVEALE RVYGECPKPS SLRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS  120
RLQTVNRKLT AMNKLLMEEN DRLQKQVSRL VYENGYMRQQ LHNPSVATTD TSCESVVTSG  180
QHHQQQNPAA TRPQRDANNP AGLLAIAEET LAEFLSKATG TAVDWVQMVG MKPGPDSIGI  240
IAVSHNCSGV AARACGLVSL EPTKVAEILK DRPSWYRDCR CVDVLHVIPT GNGGTIELIY  300
MQTYAPTTLA APRDFWILRY TSGLEDGSLV ICERSLTQST GGPSGPNTPN FVRAEVLPSG  360
YLIRPCEGGG SMIHIVDHVD LDAWSVPEVL RPLYESPKIL AQKMTIAALR HIRQIAHESS  420
GEMPYGGGRQ PAVLRTFSQR LSRGFNDAVN GFPDDGWSLM SSDGAEDVTI AFNSSPNKLV  480
GSHVNSSQLF SAIGGGILCA KASMLLQNVP PALLVRFLRE HRSEWADPGV DAYSAAALRA  540
SPYAVPGLRA GGFMGSQVIL PLAHTLEHEE FLEVIRLEGH SLCHDEVVLS RDMYLLQLCS  600
GVDENAAGAC AQLVFAPIDE SFADDAPLLP SGFRVIPLDG KTDAPSATRT LDLASTLEVG  660
SGGTTRASSD TSSTCNTRSV LTIAFQFSYE NHLRESVAAM ARQYVRTVVA SVQRVAMAIA  720
PSRLGGQIET KNPPGSPEAH TLARWIGRSY RFHTGADLLR TDSQSTDSSL KAMWQHSDSI  780
MCCSLKAAPV FTFANQAGLD MLETTLIALQ DISLEKILDD DGRKALCTEF PKIMQQGFAY  840
LPGGVCVSSM GRPVSYEQAV AWKVLSDDDT PHCLAFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0D9ZAY20.0A0A0D9ZAY2_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]