PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G27310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 443aa MW: 46664.1 Da PI: 9.8204 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 70.7 | 2.2e-22 | 116 | 160 | 2 | 46 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ OGLUM03G27310.1 116 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 160 9*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 113 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.49E-8 | 113 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-15 | 116 | 159 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MATTAATAPD LSLHISPPSP PDMAAGGETM EQLAEPKLCL GFGTAAAAAA AEQYNNGGCN 60 LQQQQWLHQP SQIQRFKKSA SGGSPVCSGG ATGTGGVAAA RSGNGGGGGK RSSRAPRMRW 120 TTALHAHFVQ AVELLGGHER ATPKSVLELM NVKDLTLAHM YRTVKGTTDR TCAEGHGQMR 180 DMGFLRRGGG GVDGFDVLGN TSSIAIANIR RQAAGSPGEH HQETMMSSAW CQPQFAQQQT 240 TACGLPLPCP YIVSTHHYLI KQNQLGGWRG SSGQQLAVQQ DAAAHSSLGI KNMGQQRLPA 300 AAAGSHDDEI VVASRIGRRS SGPAGFARSS PPAASGCWTP TTTTWSPPPP LTPQTTSTTT 360 TTRGSSVVVA AAAQACMKQQ QQQQTPSRVP SLEISLGRQG WQSGSSLEQQ QQHQQRHHQQ 420 QQRQRSVESS ASKELTLLNA FMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092780 | 0.0 | AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629915.1 | 0.0 | uncharacterized protein LOC9269134 isoform X2 | ||||
TrEMBL | A0A0D9ZAQ3 | 0.0 | A0A0D9ZAQ3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G27310.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 4e-25 | G2-like family protein |