PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G27190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1024aa MW: 117910 Da PI: 9.806 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.9 | 5.9e-21 | 105 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v OGLUM03G27190.1 105 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 189 56666..445555.6********888655..4459***************..**************************************..99 PP EEE-S CS B3 95 kvfrk 99 k+f+ OGLUM03G27190.1 190 KIFDP 194 99986 PP | |||||||
2 | B3 | 54 | 2.9e-17 | 293 | 376 | 1 | 87 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L++gD+++F+l ++ OGLUM03G27190.1 293 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVGDTCLFELLKN 376 77889999999999999**********76555....3455.667*********77666666.89**********************8765 PP | |||||||
3 | B3 | 66 | 5.6e-21 | 409 | 490 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le +sg +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ OGLUM03G27190.1 409 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 490 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 39.9 | 7.7e-13 | 622 | 673 | 34 | 87 |
SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++l+l++ + +sW+v++ ++++ks++ lt+GWk+Fv++n L+ gD ++F+ ++ OGLUM03G27190.1 622 QELMLRH-RDKSWKVRFyRFKNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILKN 673 5677666.78******9444777766..9**********************6554 PP | |||||||
5 | B3 | 56.7 | 4.4e-18 | 730 | 816 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF +dg s+ +v OGLUM03G27190.1 730 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFNYDGISKL--KVL 814 5555..44444.57********555666..66789999999********..********************************986555..777 PP EE CS B3 96 vf 97 +f OGLUM03G27190.1 815 IF 816 77 PP | |||||||
6 | B3 | 47.3 | 3.6e-15 | 940 | 1023 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k OGLUM03G27190.1 940 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 1023 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-24 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-25 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 102 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.51E-20 | 104 | 193 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 105 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-19 | 105 | 193 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-29 | 281 | 377 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-21 | 286 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-18 | 291 | 377 | No hit | No description |
SMART | SM01019 | 4.2E-12 | 293 | 383 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-16 | 293 | 377 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 294 | 388 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-25 | 393 | 504 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-23 | 395 | 493 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 398 | 491 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.86E-20 | 399 | 489 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 401 | 491 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-18 | 401 | 489 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-17 | 581 | 676 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 584 | 683 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.91E-10 | 592 | 669 | No hit | No description |
SMART | SM01019 | 9.6E-4 | 593 | 687 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-10 | 621 | 673 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 623 | 684 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-21 | 722 | 821 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.662 | 726 | 819 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.24E-20 | 729 | 816 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 729 | 819 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-16 | 729 | 816 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-21 | 739 | 827 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 922 | 1021 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-18 | 923 | 1021 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 929 | 1024 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.62E-13 | 931 | 1022 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 932 | 1024 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 939 | 1023 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1024 aa Download sequence Send to blast |
MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLT GGPSLPSFFP 60 SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP 120 YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR 180 YTGNSQFEVK IFDPSGCVKA ASHNAVNIGQ HAQNMQGDPI EILSCSDEHL RAQSLTTERQ 240 NQPEKDVIDN CNKKMKTEHA SSSEDDQETP TAEVHRMKVE EMVRAIHSNH PVFVAVMKKS 300 NVTRQPCYVA ISRKYANEYF PGGDQMLTLQ RHGKRWQVKF CISKRKLRML SKGWRKFTRD 360 NELQVGDTCL FELLKNENPC GQKMRKLNTR STARDDQEKY FFKVMIGDFH KRMTIPDKFA 420 RHFKGVISKT IKLEPRSGYT FDVQVTKKLN ILVLGSGWES FVNAHDLNMG DFLVFKYNGD 480 FLLQVLIFDP SGCEKSTSCS MENAIDHVGQ GWKEHNDIST SCHDQPKGNK HWMQKDSSSK 540 GNKIGNTRSS NTPSKFSGCI LPRGTCLPVV QEKKMKEKIQ AIHSKTPMYG NVMTKCNVSG 600 SPCVLEITQL YDDAYLPFNN GQELMLRHRD KSWKVRFYRF KNKSRKLTQG WKRFVHDNYL 660 RMGDLCLFEI LKNKYTMNQV HCKLDTECLR LAGCKKNQES YKMRRPGARC REGHAHFNGN 720 HIDGQYKNFF KVMIGRFRER MIIPNEFLQY FRGKIPRTIK LQLRDGCTYD VQVTKNLGKI 780 SLQSGWKAFV TAHDLQMGDF LVFNYDGISK LKVLIFGPSG CEKVHSRPTL KNATHCGEKW 840 EEPLHISSNS HDLPVKSPQN VSKSEKQWDS SEQENDTANI EEVALQGDDL QGHPVLNCIL 900 PKHTRLTDMQ KQQLESKVGA IHSEIPIYGC ILRKSRVHGK SQTVDICREY ADVYLPFKEL 960 NMTLQRHGKN WEVLCRTKDT RTKRLSTGWS RFAQENNLQV GDICLFELLK KKEYSMNVHI 1020 IPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0D9ZAN5 | 0.0 | A0A0D9ZAN5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G27190.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-25 | B3 family protein |