PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1024aa    MW: 117910 Da    PI: 9.806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.9e-21105194199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   v
  OGLUM03G27190.1 105 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 189
                      56666..445555.6********888655..4459***************..**************************************..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+ 
  OGLUM03G27190.1 190 KIFDP 194
                      99986 PP

2B3542.9e-17293376187
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L++gD+++F+l ++
  OGLUM03G27190.1 293 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVGDTCLFELLKN 376
                      77889999999999999**********76555....3455.667*********77666666.89**********************8765 PP

3B3665.6e-214094901299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa++++g+   skt++le +sg +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  OGLUM03G27190.1 409 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 490
                      4568********999999..899****************..*******************************976..88889999985 PP

4B339.97.7e-136226733487
                      SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++l+l++ + +sW+v++ ++++ks++  lt+GWk+Fv++n L+ gD ++F+  ++
  OGLUM03G27190.1 622 QELMLRH-RDKSWKVRFyRFKNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILKN 673
                      5677666.78******9444777766..9**********************6554 PP

5B356.74.4e-18730816297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF +dg s+   +v 
  OGLUM03G27190.1 730 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFNYDGISKL--KVL 814
                      5555..44444.57********555666..66789999999********..********************************986555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  OGLUM03G27190.1 815 IF 816
                      77 PP

6B347.33.6e-1594010231299
                       HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                       ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  OGLUM03G27190.1  940 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 1023
                       56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2499197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2599197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59102195IPR003340B3 DNA binding domain
CDDcd100171.51E-20104193No hitNo description
SMARTSM010191.5E-13105195IPR003340B3 DNA binding domain
PfamPF023626.7E-19105193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-29281377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-21286376IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-18291377No hitNo description
SMARTSM010194.2E-12293383IPR003340B3 DNA binding domain
PfamPF023629.1E-16293377IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661294388IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-25393504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-23395493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915398491IPR003340B3 DNA binding domain
CDDcd100171.86E-20399489No hitNo description
SMARTSM010191.4E-11401491IPR003340B3 DNA binding domain
PfamPF023621.5E-18401489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-17581676IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15584683IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-10592669No hitNo description
SMARTSM010199.6E-4593687IPR003340B3 DNA binding domain
PfamPF023623.3E-10621673IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588623684IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-21722821IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.662726819IPR003340B3 DNA binding domain
CDDcd100171.24E-20729816No hitNo description
SMARTSM010191.4E-11729819IPR003340B3 DNA binding domain
PfamPF023627.4E-16729816IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-21739827IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-209221021IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-189231021IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2669291024IPR003340B3 DNA binding domain
CDDcd100172.62E-139311022No hitNo description
SMARTSM010195.6E-89321024IPR003340B3 DNA binding domain
PfamPF023621.4E-139391023IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLT GGPSLPSFFP  60
SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP  120
YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR  180
YTGNSQFEVK IFDPSGCVKA ASHNAVNIGQ HAQNMQGDPI EILSCSDEHL RAQSLTTERQ  240
NQPEKDVIDN CNKKMKTEHA SSSEDDQETP TAEVHRMKVE EMVRAIHSNH PVFVAVMKKS  300
NVTRQPCYVA ISRKYANEYF PGGDQMLTLQ RHGKRWQVKF CISKRKLRML SKGWRKFTRD  360
NELQVGDTCL FELLKNENPC GQKMRKLNTR STARDDQEKY FFKVMIGDFH KRMTIPDKFA  420
RHFKGVISKT IKLEPRSGYT FDVQVTKKLN ILVLGSGWES FVNAHDLNMG DFLVFKYNGD  480
FLLQVLIFDP SGCEKSTSCS MENAIDHVGQ GWKEHNDIST SCHDQPKGNK HWMQKDSSSK  540
GNKIGNTRSS NTPSKFSGCI LPRGTCLPVV QEKKMKEKIQ AIHSKTPMYG NVMTKCNVSG  600
SPCVLEITQL YDDAYLPFNN GQELMLRHRD KSWKVRFYRF KNKSRKLTQG WKRFVHDNYL  660
RMGDLCLFEI LKNKYTMNQV HCKLDTECLR LAGCKKNQES YKMRRPGARC REGHAHFNGN  720
HIDGQYKNFF KVMIGRFRER MIIPNEFLQY FRGKIPRTIK LQLRDGCTYD VQVTKNLGKI  780
SLQSGWKAFV TAHDLQMGDF LVFNYDGISK LKVLIFGPSG CEKVHSRPTL KNATHCGEKW  840
EEPLHISSNS HDLPVKSPQN VSKSEKQWDS SEQENDTANI EEVALQGDDL QGHPVLNCIL  900
PKHTRLTDMQ KQQLESKVGA IHSEIPIYGC ILRKSRVHGK SQTVDICREY ADVYLPFKEL  960
NMTLQRHGKN WEVLCRTKDT RTKRLSTGWS RFAQENNLQV GDICLFELLK KKEYSMNVHI  1020
IPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9ZAN50.0A0A0D9ZAN5_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27190.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-25B3 family protein