PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27070.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 361aa    MW: 37802.5 Da    PI: 7.0542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.97.4e-142116111127
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyat..gkrknra...........tksgy 82 
                      ++ l++++L++k+++++++l  +i+++d+y++ P dL +         + ++    +yfF++ ++       +r++ra            + g 
  OGLUM03G27070.2  21 EQKLITKFLRPKIADDTIKL-PFIHDADVYSAAPPDLAArhvpargtdRGDGAGAVYYFFCPVHRGGGGvgARRRQRAvgggggsngeaGHCGC 113
                      789****************9.88**************84456665433222233366999999998764213455555899999888776689* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      W+  g +k+vl+++g+ vg  + L +    +g+ ++ ++  W+m e+ 
  OGLUM03G27070.2 114 WHPEGGKKAVLDAGGRRVGHLRRLSYGvreRGSGRRLTRLGWCMTEFG 161
                      **************************97767788888899******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.25411185IPR003441NAC domain
PfamPF023659.6E-821161IPR003441NAC domain
SuperFamilySSF1019416.93E-2521185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSMNPVAIPI DEGPSGHEQH EQKLITKFLR PKIADDTIKL PFIHDADVYS AAPPDLAARH  60
VPARGTDRGD GAGAVYYFFC PVHRGGGGVG ARRRQRAVGG GGGSNGEAGH CGCWHPEGGK  120
KAVLDAGGRR VGHLRRLSYG VRERGSGRRL TRLGWCMTEF GVDHGGGGGG EADAGGLVLC  180
KMYRSPRAAQ VEARLQAAAA STSGSKRKQA ADDLIHAPAS SRHRHADVMP AGVDGDEVGS  240
IHPSVQFPPP PEEQTLVQTR DGPRTDHEVI MALAMGATVD ELLGPKHGEP GESSPFPAPA  300
AEPCSISGGG DIFWTASGVV PCPDMAMAFP APPAGEFSWD KELAWIRELL SGSRPSSCSA  360
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZAL90.0A0A0D9ZAL9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27070.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158