PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G25950.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 782aa MW: 88811.9 Da PI: 5.97

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G25950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	297.8	2.7e-91	360	696	1	338
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + +++ l+++++ ++P+l+ s OGLUM03G25950.1 360 LRTLLIDCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRAS 450 6789*******************************************************999998887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h N++I++ +g+ +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++ OGLUM03G25950.1 451 HYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKW 544 ******************************************************999999********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l++++++++++E+l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v + +++ + Fl+rf e +++y +lfd+l++++pr++e OGLUM03G25950.1 545 EALSPKDFNIEKDEVLIVNCIYRMKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNE 638 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +r+ +Er + + nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + + OGLUM03G25950.1 639 TRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQ 696 ****999999*********************************998887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.468	334	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.5E-89	360	696	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MSASQNLHRL PEFCVIPATA CSREPGLPRI VVRSNMGSDD NKRFDDFHVI TNGPGSDAYS 60 NEESINLDSY IAPSTSFCSK IYNPQLYVEK GNGTTDWCQT SGGDYPEKSS INSDITLSYI 120 DKILMQEDID DRGNEDTALQ AMEEPFYELL GEKYPAFPQQ QPLCVCDHLQ NLSANTDKSN 180 GHACNTWSVT RMTNISSSMN SNGNFQGFQF PWSLSSITRE TEQFTHHSNR MVVGLKVDGL 240 SISEKPSQDN CSLQIDAHYM RKHPLFEVHD RKSSPCIEDL DLLEGRSNKQ YAIYYDEPIR 300 DEMFDNVLLC SDHKPLDEGV SLSRAMTNNS SKSSQIGQGK TSARRKTTGK RIQKRDVVDL 360 RTLLIDCAQA VSVSNHSLAS DILKIIRHHA SPTGDDSQRL ALCLAYCLDV RLTGTGSQIY 420 HKFITKRRNV KDILKVFHVC LSTCPFLRAS HYFSNRTIVD VSKGKPQVHI IDFGICFGFQ 480 WPSLFEELAK IEDGPPKLRI TGIELPESGF RPYARSNNIG LRLADYAKTF NIPFEYQHIS 540 SNKWEALSPK DFNIEKDEVL IVNCIYRMKD LGDETISINS ARSRVLNTIR MMKPKVFVQG 600 VLNGSYGVPF FLTRFKEVMY HYNSLFDMLD KNIPRDNETR MIIERDIYQY IMLNVIACEG 660 PERIERPESY KKWKVRNLKA GLVQLPLNPA IVRETQDMSS DQASIRLCLV CYGNIYDSYH 720 VSGDTREVSC DTYQVSDDSY HVSGDTREIS CDTYQVSDDF YHVSGDTCEI SDDTYRISGD 780 SY

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MSASQNLHRL PEFCVIPATA CSREPGLPRI VVRSNMGSDD NKRFDDFHVI TNGPGSDAYS  60
NEESINLDSY IAPSTSFCSK IYNPQLYVEK GNGTTDWCQT SGGDYPEKSS INSDITLSYI  120
DKILMQEDID DRGNEDTALQ AMEEPFYELL GEKYPAFPQQ QPLCVCDHLQ NLSANTDKSN  180
GHACNTWSVT RMTNISSSMN SNGNFQGFQF PWSLSSITRE TEQFTHHSNR MVVGLKVDGL  240
SISEKPSQDN CSLQIDAHYM RKHPLFEVHD RKSSPCIEDL DLLEGRSNKQ YAIYYDEPIR  300
DEMFDNVLLC SDHKPLDEGV SLSRAMTNNS SKSSQIGQGK TSARRKTTGK RIQKRDVVDL  360
RTLLIDCAQA VSVSNHSLAS DILKIIRHHA SPTGDDSQRL ALCLAYCLDV RLTGTGSQIY  420
HKFITKRRNV KDILKVFHVC LSTCPFLRAS HYFSNRTIVD VSKGKPQVHI IDFGICFGFQ  480
WPSLFEELAK IEDGPPKLRI TGIELPESGF RPYARSNNIG LRLADYAKTF NIPFEYQHIS  540
SNKWEALSPK DFNIEKDEVL IVNCIYRMKD LGDETISINS ARSRVLNTIR MMKPKVFVQG  600
VLNGSYGVPF FLTRFKEVMY HYNSLFDMLD KNIPRDNETR MIIERDIYQY IMLNVIACEG  660
PERIERPESY KKWKVRNLKA GLVQLPLNPA IVRETQDMSS DQASIRLCLV CYGNIYDSYH  720
VSGDTREVSC DTYQVSDDSY HVSGDTREIS CDTYQVSDDF YHVSGDTCEI SDDTYRISGD  780
SY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-36	364	688	8	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630113.1	0.0	scarecrow-like protein 14
TrEMBL	A0A0D9ZA81	0.0	A0A0D9ZA81_9ORYZ; Uncharacterized protein
STRING	OGLUM03G25950.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-128	GRAS family protein