PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G23890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 194aa    MW: 20922.9 Da    PI: 11.3534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G23890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1417111186
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k++tp+dv+k++rlv+pk++ae+h        +  +++    t ++++  s + +     +++sg++  t+  ++Fv+++gL++gD+vvF++
  OGLUM03G23890.1  17 FEKAMTPNDVGKLNRLVVPKQHAEKHfplrrtsfD-ASATAAAATCNSTRACSSTSRTARgrCGGSGTHARTAARSRFVREKGLRAGDTVVFSR 109
                      99*************************99998852.33344566666666666666664444566677************************96 PP

                      -S CS
               B3  85 dg 86 
                      + 
  OGLUM03G23890.1 110 SA 111
                      64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2012127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-1314122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-1115110No hitNo description
PfamPF023621.6E-1117111IPR003340B3 DNA binding domain
SMARTSM010190.007817125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGARTQPTPS WAREPLFEKA MTPNDVGKLN RLVVPKQHAE KHFPLRRTSF DASATAAAAT  60
CNSTRACSST SRTARGRCGG SGTHARTAAR SRFVREKGLR AGDTVVFSRS AYGPDKLLFI  120
DCKKNNTAAA TGDEKPITSG EAARVGRLFG MDITGGGGNF RKRERAVEMG QEAFLMKRQC  180
VVHQRTPALG ALLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-251412311115DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661971e-158AK066197.1 Oryza sativa Japonica Group cDNA clone:J013055M02, full insert sequence.
GenBankAP0048171e-158AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10.
GenBankAP0050021e-158AP005002.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0486G03.
GenBankAP0149581e-158AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624199.21e-102LOW QUALITY PROTEIN: B3 domain-containing protein Os02g0764100-like
SwissprotQ0DXB11e-102Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
TrEMBLA0A0D9Z9I51e-140A0A0D9Z9I5_9ORYZ; Uncharacterized protein
STRINGOGLUM03G23890.11e-140(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-22related to ABI3/VP1 1