PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G23560.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 477aa MW: 50908.8 Da PI: 8.7672 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.5 | 2.5e-32 | 200 | 256 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+ OGLUM03G23560.3 200 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 256 8****************************************.***************8 PP | |||||||
2 | WRKY | 104.2 | 7.3e-33 | 366 | 424 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+ OGLUM03G23560.3 366 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 424 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-29 | 190 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-26 | 194 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.593 | 194 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-34 | 199 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 200 | 256 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-36 | 353 | 426 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 358 | 426 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.172 | 361 | 426 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 366 | 425 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 367 | 424 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MAAHEGGGNG ARRPPAPPLL PTLSLPPRSA AGSLFSAESS PGALTLAASL FPDAPSPAFQ 60 GSFTQLLVGA MGYPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ 120 VTAEAVHSPY SMINQSDFSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTDNSNIE 180 STEVSHGFQT TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS 240 DGQITQILYR GQHNHQRPPK RRSKDGGALL NEADVSPEKE DASTRSEQGS QDYSGKFKAS 300 NDGGPSSSRR GDRGEQISGS SDSNDQGEEE VKVEGGATSD GNANKRHVPA PAQRIIVQTT 360 SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK KHIERSSQDP KAVITTYEGK 420 HSHDVPAARN SSHSSANANV SSSSNLPHKD RGQRSSRRDG LRNASSVSSL QLKEESG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-38 | 185 | 427 | 5 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-38 | 185 | 427 | 5 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | RPPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF193802 | 0.0 | AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633314.1 | 0.0 | probable WRKY transcription factor 4 isoform X1 | ||||
Swissprot | Q9XI90 | 1e-103 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0D3FKA4 | 0.0 | A0A0D3FKA4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Z9E8 | 0.0 | A0A0D9Z9E8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0J1C4 | 0.0 | A0A0E0J1C4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G11410.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.2 | 4e-95 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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