PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G23560.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 487aa    MW: 52055.1 Da    PI: 9.1182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G23560.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-32200256259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  OGLUM03G23560.2 200 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 256
                      8****************************************.***************8 PP
2WRKY104.17.5e-33366424159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  OGLUM03G23560.2 366 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 424
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29190258IPR003657WRKY domain
SuperFamilySSF1182905.36E-26194258IPR003657WRKY domain
PROSITE profilePS5081124.593194258IPR003657WRKY domain
SMARTSM007744.4E-34199257IPR003657WRKY domain
PfamPF031062.2E-24200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36353426IPR003657WRKY domain
SuperFamilySSF1182902.35E-29358426IPR003657WRKY domain
PROSITE profilePS5081137.172361426IPR003657WRKY domain
SMARTSM007741.0E-38366425IPR003657WRKY domain
PfamPF031061.7E-25367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAAHEGGGNG ARRPPAPPLL PTLSLPPRSA AGSLFSAESS PGALTLAASL FPDAPSPAFQ  60
GSFTQLLVGA MGYPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ  120
VTAEAVHSPY SMINQSDFSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTDNSNIE  180
STEVSHGFQT TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS  240
DGQITQILYR GQHNHQRPPK RRSKDGGALL NEADVSPEKE DASTRSEQGS QDYSGKFKAS  300
NDGGPSSSRR GDRGEQISGS SDSNDQGEEE VKVEGGATSD GNANKRHVPA PAQRIIVQTT  360
SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK KHIERSSQDP KAVITTYEGK  420
HSHDVPAARN SSHSSANANV SSSSNLPHKD RGQRSSRRDG LRNASSGKHG QKAMYMLGVV  480
STNTRDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38185427578Probable WRKY transcription factor 4
2lex_A6e-38185427578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-103WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D9Z9E70.0A0A0D9Z9E7_9ORYZ; Uncharacterized protein
STRINGONIVA11G11410.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.27e-95WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]