PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G23560.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 528aa    MW: 56791.6 Da    PI: 9.2271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G23560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32200256259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  OGLUM03G23560.1 200 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 256
                      8****************************************.***************8 PP
2WRKY36.68.9e-12366388123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vkg+++pr+
  OGLUM03G23560.1 366 LDDGYRWRKYGQKVVKGNPHPRA 388
                      59********************6 PP
3WRKY55.79.5e-184344751859
                      -SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       e +rsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  OGLUM03G23560.1 434 PEKTRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 475
                      6789*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-29190258IPR003657WRKY domain
SuperFamilySSF1182906.02E-26194258IPR003657WRKY domain
PROSITE profilePS5081124.593194258IPR003657WRKY domain
SMARTSM007744.4E-34199257IPR003657WRKY domain
PfamPF031062.4E-24200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-33353386IPR003657WRKY domain
SuperFamilySSF1182905.49E-10358388IPR003657WRKY domain
PROSITE profilePS5081128.725361477IPR003657WRKY domain
SMARTSM007746.8E-33366476IPR003657WRKY domain
PfamPF031061.6E-7367388IPR003657WRKY domain
PfamPF031065.1E-12435475IPR003657WRKY domain
SuperFamilySSF1182904.32E-14435477IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-33438477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAAHEGGGNG ARRPPAPPLL PTLSLPPRSA AGSLFSAESS PGALTLAASL FPDAPSPAFQ  60
GSFTQLLVGA MGYPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ  120
VTAEAVHSPY SMINQSDFSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTDNSNIE  180
STEVSHGFQT TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS  240
DGQITQILYR GQHNHQRPPK RRSKDGGALL NEADVSPEKE DASTRSEQGS QDYSGKFKAS  300
NDGGPSSSRR GDRGEQISGS SDSNDQGEEE VKVEGGATSD GNANKRHVPA PAQRIIVQTT  360
SEVDLLDDGY RWRKYGQKVV KGNPHPRAPC YLGPINYSKM GDPFYATTFH QMSSAMMSHW  420
NMGLVLQKYR SKVPEKTRSY YKCTYQGCDV KKHIERSSQD PKAVITTYEG KHSHDVPAAR  480
NSSHSSANAN VSSSSNLPHK DRGQRSSRRD GLRNASSVSS LQLKEESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25185478578Probable WRKY transcription factor 4
2lex_A1e-25185478578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RPPKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633315.10.0probable WRKY transcription factor 4 isoform X2
TrEMBLA0A0D9Z9E60.0A0A0D9Z9E6_9ORYZ; Uncharacterized protein
STRINGOGLUM03G23560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.26e-85WRKY DNA-binding protein 4