PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G19040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 567aa    MW: 62660.8 Da    PI: 7.8433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G19040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-352713632103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll+
  OGLUM03G19040.1 271 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 355
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  OGLUM03G19040.1 356 EIHRRKSS 363
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF502493.34E-1125136IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1405.1E-728136IPR012340Nucleic acid-binding, OB-fold
CDDcd044831.16E-2940124No hitNo description
PfamPF013368.8E-841130IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
SMARTSM004156.5E-58267360IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-37268360IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.41E-33268360IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-19271294IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-31271360IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19309321IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340310334IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19322334IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDSLHLVHVK LLAADLLSLA SRHTSPPSFA RCGRTVTRAE IVGVVVSRDR REKFLRFLVD  60
DGTGCVPCVL WLNHHYLNAA SSSSRASDSD PTAEMALRMS EVVSLGTLLR VRGRIVLYRG  120
AIQIAVRDVV LEKDPNVEDQ AELGEEKIWA TALSASKAQI EAAKINLEKG MGNPLDQTKE  180
ARKLDQRTVQ DCMMGSTYET SKSSAQKHSC LYPKATHGPW QHERVAGEHA HARSMAFLVE  240
RCGGEMVVSM ERSHGRSTTT AAAVTAAPAP FLSKTYQLVD DPSTDDVVSW GEDEATFVVW  300
RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANEFFRKGA KHLLSEIHRR  360
KSSSCSQPQP PPPFPMHQHY PLSLFSPPTT TRSPPVGAAA AAAYHFQEEY CSSPADYAGG  420
GGDLLAALSE DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVEPVAPP PLAAATSCRL  480
VELGPSTTER RRSAASPSGD NDDDAAVRLF GVRLDDDHGK KRRVQLVQED EGDEQGSEGS  540
GVSIQMRMKA PLNTKSLLSG ARTVPYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-212653602106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-212653602106HEAT-SHOCK TRANSCRIPTION FACTOR
5d8k_B2e-212683643109Heat shock factor protein 2
5d8l_B2e-212683643109Heat shock factor protein 2
5d8l_D2e-212683643109Heat shock factor protein 2
5d8l_F2e-212683643109Heat shock factor protein 2
5d8l_H2e-212683643109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.10.0heat stress transcription factor B-4d
RefseqXP_025880033.10.0heat stress transcription factor B-4d
RefseqXP_025880034.10.0heat stress transcription factor B-4d
RefseqXP_025880035.10.0heat stress transcription factor B-4d
RefseqXP_025880036.10.0heat stress transcription factor B-4d
SwissprotQ10KX80.0HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0D9Z7S90.0A0A0D9Z7S9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G19040.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP622822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-64heat shock transcription factor B4