PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09050.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 139aa    MW: 16126.6 Da    PI: 4.9805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.22.7e-2242136289
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      + GfrF Pt+e l+++yL++k++g + ++e vi+ +diy+++P +L +       +  +e + w++F++r++++ +g r++ +t sgyWka g+
  OGLUM03G09050.1  42 ALGFRFYPTEEKLICFYLRNKLDGLRDDIECVIPIFDIYSIDPLQLSEihhemlgSSGEEGEPWFYFCPRQEREVRGGRPSWTTPSGYWKAVGT 135
                      67************************999888**************85456655433336669****************************997 PP

              NAM  89 d 89 
                       
  OGLUM03G09050.1 136 P 136
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-2531138IPR003441NAC domain
PROSITE profilePS5100526.2441139IPR003441NAC domain
PfamPF023653.2E-1244132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAKRKEWLTT TRLTMHMVVQ QDWIEVCPMD ELGPAMLGLR LALGFRFYPT EEKLICFYLR  60
NKLDGLRDDI ECVIPIFDIY SIDPLQLSEI HHEMLGSSGE EGEPWFYFCP RQEREVRGGR  120
PSWTTPSGYW KAVGTPGVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-133913918110NAC domain-containing protein 19
3swm_B6e-133913918110NAC domain-containing protein 19
3swm_C6e-133913918110NAC domain-containing protein 19
3swm_D6e-133913918110NAC domain-containing protein 19
3swp_A6e-133913918110NAC domain-containing protein 19
3swp_B6e-133913918110NAC domain-containing protein 19
3swp_C6e-133913918110NAC domain-containing protein 19
3swp_D6e-133913918110NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-125AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632691.14e-54NAC domain-containing protein 90 isoform X2
SwissprotQ9FMR31e-30NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0D9Z4584e-99A0A0D9Z458_9ORYZ; Uncharacterized protein
STRINGOGLUM03G09050.11e-100(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-33NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]