PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G04700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 596aa MW: 63223.9 Da PI: 6.6401 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 352 | 389 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + OGLUM03G04700.1 352 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 389 554459******************************88 PP | |||||||
2 | BELL | 111.9 | 3.6e-36 | 213 | 283 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai q OGLUM03G04700.1 213 ERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAARPYTALALQTISRHFRSLRDAIGAQ 283 799*****************************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.4E-49 | 140 | 282 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-48 | 145 | 280 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 330 | 393 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.34E-12 | 333 | 394 | No hit | No description |
SMART | SM00389 | 1.7E-9 | 333 | 397 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 334 | 400 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 336 | 399 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.7E-17 | 350 | 389 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MATFFSSSTN QRDLTGGGGD GGDMSFQHYP PPSNPYSDSS AGGLIPLPAS IVSHSHIAHG 60 GGDEPAAFRE AATADGGEMG LQTQLLMAHG AAARGHQGGL SLSLGTQVPV SLYQYRPAGM 120 AAASLLSPSQ SSPMAGRSAQ NSIYVQNSRF LRAARELLDE VVNVRDAIKR KGDKNQGKDS 180 GECKGGDAAG DDKAGSNPQE QESNSAPELS PSERQDLQNK VTALMAMLDQ VDRRYRHYHH 240 QMQIVMSSFD AVAGGGAARP YTALALQTIS RHFRSLRDAI GAQAQAARRG LGEQDASAQG 300 GGGLSRLRYI DQQLRQQRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP 360 KDSEKLMLAR QTGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGTEMDSN SSSENGGKGK 420 DEAISSEDRD EFQSPSSAAA ARHAGVAGQL NNPFKSEAMG GAALDVGVGV VGLSSCLGGA 480 MGTYATGLNL NHHVHHPGAG GTSLLHDALH HHHHGGGGDA RFVSYGDMAD LGGGGGYDGG 540 SVSLTLGLQH CNNAGPVPAE QQGLLYGSAG DFDYINGSDD RQRFGPASQL LHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 1e-17 | 339 | 397 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 339 | 397 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068034 | 0.0 | AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630993.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_025879612.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | O65685 | 1e-113 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A0D9Z2I1 | 0.0 | A0A0D9Z2I1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G04700.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 2e-90 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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