PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G38210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 742aa    MW: 82477.4 Da    PI: 5.1391
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G38210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.44.9e-166126412655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPk++ ++mkv+gLt++hvkSHLQkYR+
  OGLUM02G38210.1 612 EATPKAVQKVMKVDGLTIYHVKSHLQKYRT 641
                      7****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF111072.9E-461211No hitNo description
PfamPF111071.5E-18218347No hitNo description
SuperFamilySSF466891.97E-5611642IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-13611642IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-11612641IPR006447Myb domain, plants
PfamPF143791.3E-17659701IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE  60
SASELDAALV QLASSPNFPK GIEDIRAKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM  120
DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL  180
LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ  240
WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG  300
LVARQWNSLI ESIMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ  360
SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAASKDRTVR FLKGFNVSTH  420
SMFKELNCQF SSGSSHGPQF KTVQEICTSN FTSDLYINNS ESPNGKLSSE SYAIDTSGCD  480
SSLPPTQSLY KGNPSSLRMV YPKVSEQNSW SQEPLPGPFV CPTSVDFFDQ QDMTIFDQQI  540
QDNIAASPST NLAKQNEWFS SGTSLQYLES SVSAGSVLKA VDATSTTPSN YLHCHAQRNT  600
SNPPNFNEIC SEATPKAVQK VMKVDGLTIY HVKSHLQKYR TVHHRPQLSD GRGMETTCEG  660
LKVQIGLQKQ LHEQLEIQRK LQLQVEEHSK YLAMIIEKQS ESLRQLGALP RSLDAPTQVL  720
DNRETCEGQT GDADSAEQKP EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663820.0AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627299.10.0uncharacterized protein LOC4331121
RefseqXP_015627301.10.0uncharacterized protein LOC4331121
RefseqXP_015627302.10.0uncharacterized protein LOC4331121
RefseqXP_025878774.10.0uncharacterized protein LOC4331121
RefseqXP_025878775.10.0uncharacterized protein LOC4331121
TrEMBLA0A0D9Z0180.0A0A0D9Z018_9ORYZ; Uncharacterized protein
STRINGOGLUM02G38210.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-27phosphate starvation response 1