PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G38020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36446.9 Da PI: 7.6144 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.1e-50 | 10 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL++kv +++ + ++ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkatgk OGLUM02G38020.1 10 LPPGFRFYPSDEELVCHYLHNKVLNQHrfagvgAAAGGTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 103 79**********************999887765444457***************87788999******************************** PP NAM 89 dkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ +++ + + vg++ktLvfy+grap+g+kt+Wvmhe+r+ OGLUM02G38020.1 104 DRVIHNPklhaaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 153 *****9877776666555555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-59 | 7 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.876 | 10 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-28 | 11 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVLNQHRFAG VGAAAGGTMV EVDLHTHEPW 60 ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KLHAAAAAHR 120 RASIVGMRKT LVFYRGRAPN GVKTNWVMHE FRMENPHTPP KEDWVLCRVF YKKKAETETE 180 SSYSMENQQE AVIAMARSAA AIKAGGCYSN SSSSHDPAAA GHHSPPPFPA SLAACSSSHH 240 YSSHPPPPPD HHHHHHMPVT GGGGGSLNEF IPTTSMALYS SIFDFSQHLD GGAVAASASA 300 SAAGSRVDGG EQCGLMELGL EEHYNYNGLM PM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 1 | 178 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 1 | 178 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 1 | 178 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 1 | 178 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-46 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 1 | 178 | 4 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 1 | 178 | 4 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060976 | 0.0 | AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623778.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q84TE6 | 1e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D9YZZ2 | 0.0 | A0A0D9YZZ2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G38020.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-76 | NAC domain containing protein 74 |