PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G36330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 563aa MW: 58757.5 Da PI: 6.265 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 212 | 260 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl OGLUM02G36330.1 212 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 260 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.1 | 3.6e-12 | 267 | 309 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ OGLUM02G36330.1 267 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 309 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.093 | 207 | 260 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-25 | 209 | 307 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 211 | 262 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 212 | 260 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 213 | 267 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.93E-9 | 214 | 260 | No hit | No description |
PROSITE profile | PS51294 | 21.924 | 261 | 315 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-10 | 265 | 313 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-11 | 267 | 309 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 268 | 315 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-6 | 269 | 309 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MAAAAARDDD LGNDNLDDDR SNPRRQSGGR TAGPIRQGLH GGIGLQMTAA MAGDDANDGG 60 HSWRRWLSTA AVAAVLLSSG DGGDDDKATE GIRGSSAGMY TDKRSVSEDT HLYPSTKPTI 120 KPARPQPQMH PLTAAAKHAI TIPPPPPPAA AASYTSSPSS GTSDPSVLDL SSAEIDDDGD 180 GDDDRAEQQE IKNSKELVMG RAPCCDKASV KKGPWSPEED AKLKAYIEEN GTGGNWIALP 240 QKIGLKRCGK SCRLRWLNYL RPNIKHGDFT EEEEHIICSL YISIGSRWSI IAAQLPGRTD 300 NDIKNYWNTK LKKKLLGKRA PSRRARANQD HCGLVGGAAA AMCGGVGTAA AAAAPHQALS 360 SSALERIQLH MRLQGLYNSA FGCTTTTSNG GGVGVAPPQW PKLEALLPSR PLPAVQPTDA 420 VVATVQHPHH LVVGGHTLAT AAATTSEAFQ AAEHLDPAAA TGSNYMPGVA GVEMTSSSSM 480 AGGGGFVAGY GLHDELYDFL FKCESIGGAQ GGIIPSSLPE LQCPDGSAII GADEKFSTWT 540 SSSCDYGSGG AGDYVLGTHY LAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 212 | 315 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004057 | 0.0 | AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624187.1 | 0.0 | uncharacterized protein LOC4330950 | ||||
TrEMBL | A0A0D9YZD7 | 0.0 | A0A0D9YZD7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G36330.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-78 | myb domain protein 36 |