PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G35670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 656aa MW: 72766.6 Da PI: 5.4078 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 539 | 586 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I r Rt ++k++w+++ OGLUM02G35670.1 539 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 586 7***************************999**99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 532 | 590 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.899 | 532 | 591 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-7 | 536 | 589 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.54E-17 | 538 | 588 | No hit | No description |
SuperFamily | SSF46689 | 4.91E-14 | 538 | 591 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MDKIPRLVSS APCAISRLNR GGAPISVWRA EQGEGILVGG PQDALDNRSD DNDFDKNDNS 60 DPVVYQLVRV EGDGTLIPAT EDEVLQFETF LHDEKVDDDL PSIDDVTHVE EYFTNDCIVK 120 KPEFEEGPSK LDTADVQTQK LDAGLEEDRL CTLNDSIVLP SNCSAVHDQQ LDKLNTEQGA 180 NIIAQQDNAS TETTKSTVLN DLSSDKEKAD ACSKPVNEAS AGQSVSGVTS SVPDFSILKG 240 EVCLDDLTMR ELQEAFRATF GRQTTVKDKL WLKRRIAMGL INSCDVPSSG CVVRDYKVIA 300 MGAKQEIPVV EAIPKMELEA NLVRDQVMNP GHERDLPSSL SYHSEEQQRS SKRLKRVPTD 360 NDEPQVTIFA EQGTTKRIRK PTKRYIEELS DIDTHESTGR LSSPGKRHVY DEVLLRPRIA 420 PLHEVDSLST AYPTREDTLG GCSVHVPYVS RMRRGRPRSN FIPFLDPEPS VECTEAPAAD 480 VVNLEKEGER KNHKNTGKKG VHVETSGEKD VQGLQDKDFC DSDDNPKTKR GGKRKHHRAW 540 TLCEVVKLVD GVARYGAGKW SEIRRLAFSS YSYRTSVDLK DKWRNLIRAS QTQLSTENDG 600 VCPRKSNPSA IPIPVSILLR VKKLAEMQSQ AGDVRVPIKF SGQSTTVVQG KVSGFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070394 | 0.0 | AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence. | |||
GenBank | FJ940213 | 0.0 | FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625825.1 | 0.0 | uncharacterized protein LOC4330901 isoform X2 | ||||
TrEMBL | A0A0D9YZ50 | 0.0 | A0A0D9YZ50_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G35670.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-79 | TRF-like 6 |