PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G35200.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 726aa MW: 76346.6 Da PI: 5.2383

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G35200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.2e-30	390	449	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ OGLUM02G35200.1 390 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 449 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	375	451	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-27	383	451	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	385	451	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	390	450	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	391	449	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTWDNRIKDE SSLLIALLIR LRHPDIDLDA SGEVALGFKT IINQKEARSM SSKKKRAAAI 60 DLSLEAERRR PEEEGGGGDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE EKVVEVVVDQ 120 GEDGSNEEIK YRTQQGDMME EDKQPAAAAN VDDDGSDSDG AGASAEEKHM VTEATGGEGD 180 DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA AYQQQPAAAD 240 EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDDGK EDLGLSLSLG 300 ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG GAAPAAGELA 360 AAGGIASQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP 420 GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTTSSSSVS 480 DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGGMQHLNL FGNSPSSSSL LAPQAPGSSK 540 YPWSPNHPPL AGAGGNKRPF WSAGGDGDKP APAALAENVG AVMSDPNKFS AAIAAAINNF 600 MGKDGESSSG KSSTFAWTRS MDCTATPASV PAPARPRREP GCPCLSPFSL SLGLLLSSSS 660 SSSPTPSRPR AHRRRNPADL LRSRIGRSPP GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL 720 RTAGKQ

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTWDNRIKDE SSLLIALLIR LRHPDIDLDA SGEVALGFKT IINQKEARSM SSKKKRAAAI  60
DLSLEAERRR PEEEGGGGDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE EKVVEVVVDQ  120
GEDGSNEEIK YRTQQGDMME EDKQPAAAAN VDDDGSDSDG AGASAEEKHM VTEATGGEGD  180
DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA AYQQQPAAAD  240
EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDDGK EDLGLSLSLG  300
ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG GAAPAAGELA  360
AAGGIASQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP  420
GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTTSSSSVS  480
DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGGMQHLNL FGNSPSSSSL LAPQAPGSSK  540
YPWSPNHPPL AGAGGNKRPF WSAGGDGDKP APAALAENVG AVMSDPNKFS AAIAAAINNF  600
MGKDGESSSG KSSTFAWTRS MDCTATPASV PAPARPRREP GCPCLSPFSL SLGLLLSSSS  660
SSSPTPSRPR AHRRRNPADL LRSRIGRSPP GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL  720
RTAGKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	377	453	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004058	0.0	AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBank	AP004080	0.0	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623937.2	0.0	probable WRKY transcription factor 47
TrEMBL	A0A0D9YYZ5	0.0	A0A0D9YYZ5_9ORYZ; Uncharacterized protein
STRING	OGLUM02G35200.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-49	WRKY DNA-binding protein 9