PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G34080.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1348aa    MW: 151123 Da    PI: 8.2936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G34080.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-1911731263185
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85  
                       f+k+ tp dv+k++rl +pk++ae+h       +  +++    t ++ +  s + +   r++s++yvltkGW++Fv+++gL++gD++vF+ +
  OGLUM02G34080.2 1173 FEKAVTPIDVGKLNRLLVPKQHAEKHfplrrtsSDASATAAAATCNSARACSSTSRT-ARGSSQSYVLTKGWSRFVREKGLRAGDTIVFSGS 1263
                       89*************************999865333334444555555555555555.4999999************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032547.0E-181104574IPR004938Xyloglucan fucosyltransferase
PfamPF032548.6E-1946841136IPR004938Xyloglucan fucosyltransferase
Gene3DG3DSA:2.40.330.101.6E-2311691279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-1811701265IPR015300DNA-binding pseudobarrel domain
CDDcd100174.89E-1511711260No hitNo description
PfamPF023622.4E-1611731263IPR003340B3 DNA binding domain
PROSITE profilePS508639.57311731278IPR003340B3 DNA binding domain
SMARTSM010198.8E-911731278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0036065Biological Processfucosylation
GO:0042546Biological Processcell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008107Molecular Functiongalactoside 2-alpha-L-fucosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1348 aa     Download sequence    Send to blast
MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA  60
RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED  120
TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK  180
RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL  240
VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS  300
LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE  360
KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII  420
RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET  480
GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW  540
VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK  600
LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK  660
HIAGAGEQDM QDDLPDDLTA SQYIGYDKFL GGLLQEGFDE VSCRSRYQFA RYHKNFTRIP  720
SSYLLERLRR QEALQKKCGP GTKSYKQAVK LLRSSQGVNM TTDCNYLFLT VHAGLGNRML  780
EIASAFLYAL LTNRILLLDR YQEIGDLFCE PFPGTSWLMP SDFPLNYGEF TQSSPESYGN  840
MLQNKVVGDN TDRSLAGSRP PYMFLYLDGN YEFHDKLFFC EDDQQFLQDV PWLIMRTDMY  900
FIPSLFLIPS YQDELSRLFP EKDAVFHHLA RYLFHPTNSI WYSVKGYYRS YLAKANKTVG  960
IQIRIFEKEG ILQKNGRFPY VLEQILSCAQ NEKLLPEISM KDEAEAPTAT KNNQTIAVLT  1020
TSLSSWYSDQ IQKKYSEHPT VDGTRVEVYQ PSHEEYQRSK NKKHNMKALA EIYLLSMTDV  1080
LITSGFSTFG YAAQGLSGLT PWIMFRSENH AMPDPPCRRA MSIEPCFHQA PFYDCKAKRN  1140
ADLGKMVPFV RHCEDVSWGL KVPTPSWARE PLFEKAVTPI DVGKLNRLLV PKQHAEKHFP  1200
LRRTSSDASA TAAAATCNSA RACSSTSRTA RGSSQSYVLT KGWSRFVREK GLRAGDTIVF  1260
SGSAYGPDKL LFIDCKKNNT AAATGDEKPI TSGEATRVVR LFGMDIAGGG GDCRKRERAV  1320
EMGQEAFLMK RQCVHSAPHY TVRSAKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5koe_A1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
5koe_B1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
5koe_C1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
5koe_D1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
5kop_A1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kop_B1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kop_C1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kop_D1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kor_A1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kor_B1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kor_C1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kor_D1e-170126116253520Galactoside 2-alpha-L-fucosyltransferase
5kwk_A1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
5kwk_B1e-17012611628475Galactoside 2-alpha-L-fucosyltransferase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009770.0AK100977.1 Oryza sativa Japonica Group cDNA clone:J023143L21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878704.10.0probable fucosyltransferase 8 isoform X3
TrEMBLA0A0D9YYK20.0A0A0D9YYK2_9ORYZ; Uncharacterized protein
STRINGOBART02G33670.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-26related to ABI3/VP1 2