PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G34080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1445aa    MW: 161553 Da    PI: 8.0853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G34080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.6e-1912701360185
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85  
                       f+k+ tp dv+k++rl +pk++ae+h       +  +++    t ++ +  s + +   r++s++yvltkGW++Fv+++gL++gD++vF+ +
  OGLUM02G34080.1 1270 FEKAVTPIDVGKLNRLLVPKQHAEKHfplrrtsSDASATAAAATCNSARACSSTSRT-ARGSSQSYVLTKGWSRFVREKGLRAGDTIVFSGS 1360
                       89*************************999865333334444555555555555555.4999999************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032548.1E-181104574IPR004938Xyloglucan fucosyltransferase
PfamPF032549.4E-1947811233IPR004938Xyloglucan fucosyltransferase
Gene3DG3DSA:2.40.330.101.7E-2312661376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-1812671362IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-1512681357No hitNo description
PROSITE profilePS508639.57312701375IPR003340B3 DNA binding domain
SMARTSM010198.8E-912701375IPR003340B3 DNA binding domain
PfamPF023622.6E-1612701360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0036065Biological Processfucosylation
GO:0042546Biological Processcell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008107Molecular Functiongalactoside 2-alpha-L-fucosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1445 aa     Download sequence    Send to blast
MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA  60
RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED  120
TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK  180
RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL  240
VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS  300
LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE  360
KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII  420
RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET  480
GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW  540
VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK  600
LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK  660
HIAGAGEQAL PIETHMERSG GGGADGDEER LPLHHGFETE RAAPWAAAES KPPPPPRGRF  720
GRASVRAALA VCFLAIPAVL LLQRWQAGSS PEWLFEIEPP ADGDRDMQDD LPDDLTASQY  780
IGYDKFLGGL LQEGFDEVSC RSRYQFARYH KNFTRIPSSY LLERLRRQEA LQKKCGPGTK  840
SYKQAVKLLR SSQGVNMTTD CNYLFLTVHA GLGNRMLEIA SAFLYALLTN RILLLDRYQE  900
IGDLFCEPFP GTSWLMPSDF PLNYGEFTQS SPESYGNMLQ NKVVGDNTDR SLAGSRPPYM  960
FLYLDGNYEF HDKLFFCEDD QQFLQDVPWL IMRTDMYFIP SLFLIPSYQD ELSRLFPEKD  1020
AVFHHLARYL FHPTNSIWYS VKGYYRSYLA KANKTVGIQI RIFEKEGILQ KNGRFPYVLE  1080
QILSCAQNEK LLPEISMKDE AEAPTATKNN QTIAVLTTSL SSWYSDQIQK KYSEHPTVDG  1140
TRVEVYQPSH EEYQRSKNKK HNMKALAEIY LLSMTDVLIT SGFSTFGYAA QGLSGLTPWI  1200
MFRSENHAMP DPPCRRAMSI EPCFHQAPFY DCKAKRNADL GKMVPFVRHC EDVSWGLKVP  1260
TPSWAREPLF EKAVTPIDVG KLNRLLVPKQ HAEKHFPLRR TSSDASATAA AATCNSARAC  1320
SSTSRTARGS SQSYVLTKGW SRFVREKGLR AGDTIVFSGS AYGPDKLLFI DCKKNNTAAA  1380
TGDEKPITSG EATRVVRLFG MDIAGGGGDC RKRERAVEMG QEAFLMKRQC VHSAPHYTVR  1440
SAKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5koe_A1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
5koe_B1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
5koe_C1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
5koe_D1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
5kop_A1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kop_B1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kop_C1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kop_D1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kor_A1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kor_B1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kor_C1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kor_D1e-169126125953520Galactoside 2-alpha-L-fucosyltransferase
5kwk_A1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
5kwk_B1e-16912612598475Galactoside 2-alpha-L-fucosyltransferase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048170.0AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10.
GenBankAP0050020.0AP005002.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0486G03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878705.10.0probable fucosyltransferase 8 isoform X4
TrEMBLA0A0D9YYK10.0A0A0D9YYK1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G34080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-26related to ABI3/VP1 2