PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G31440.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 407aa    MW: 44090.5 Da    PI: 8.2036
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G31440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-0771112540
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  OGLUM02G31440.1  71 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 112
                      7*****************************657888889876 PP
2zf-B_box22.23e-07114156541
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  OGLUM02G31440.1 114 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 156
                      7*****************************.5588889998876 PP
3CCT64.53.2e-22350393144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OGLUM02G31440.1 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-1267114IPR000315B-box-type zinc finger
PROSITE profilePS501199.95467114IPR000315B-box-type zinc finger
CDDcd000219.53E-871114No hitNo description
PROSITE profilePS501199.058110157IPR000315B-box-type zinc finger
CDDcd000218.45E-6114157No hitNo description
SMARTSM003360.24115157IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408350392IPR010402CCT domain
PfamPF062037.0E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRILLNS TVEQKARKVA VLVALSASGS  60
APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG  120
QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP  180
TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST ALMSDLPTGD KFKPLIGSSS  240
GDGMNLLPLN SDQPAEPVST TPKQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA  300
ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-112COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D9YXL60.0A0A0D9YXL6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G31440.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-79CONSTANS-like 9