PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G29590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 600aa MW: 61957.5 Da PI: 6.6285 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 333 | 391 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OGLUM02G29590.1 333 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 391 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.109 | 327 | 393 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.0E-31 | 327 | 393 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-26 | 330 | 393 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 332 | 392 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 334 | 391 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MIHPLMSSLP PLHLSFLLFF LSFRTYKTAL SILSLSLVSQ QFCPLPLGAR LLAGFTQHYT 60 TTSIIVLLPS RASERERERE RERGGGGGGG QIIMCDYFLQ RMEGEQAAGD LADIVLRAGG 120 AAAAAVAGGG IPSTEWQLPP AEEEEEEPGF FPLPPSSSDG SGMSGADAFG DPFAGLPDPF 180 GGDYPSSSGG AAAAADFFDA VVAKAGFVDV GVLGGGGGGG CDGGGVDGGG GGSSLLGMSK 240 PILPRAAMQL PSVSPRAIRP YPVMAGDTVK LGAPMAGGPC AFDGAAAAGL HMSSSPRGAV 300 GGIKRRKNQA RKVVCIPAPA AAGGRTSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS 360 SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHAKN SSSNSSSSGA 420 SSASKNNSSH SGYHHQKPLV KAEPNDQSAA AAAATTAATV PVKEEAAMVG TSSEALAKTT 480 QKSMEDAAAA ASATAAAVEH SDLMQQMFSQ SYRPMIPEAA AGGHHDDFFA DLAELESDPM 540 SLIFSKEYMA TNYKPAGDPA GKEMNAVDKG LDPAYMLDWS STTVVTRAGG SSFMQGEGGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-25 | 307 | 394 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-25 | 307 | 394 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073100 | 0.0 | AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624748.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | A0A0D9YWV9 | 0.0 | A0A0D9YWV9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G29590.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 9e-66 | WRKY DNA-binding protein 35 |