PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 719aa    MW: 76003.8 Da    PI: 10.131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07222266244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  OGLUM02G20470.1 222 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 266
                      68******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555216274IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11216273IPR009057Homeodomain-like
SMARTSM007172.4E-6220272IPR001005SANT/Myb domain
PfamPF002493.6E-6222266IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-13223285IPR009057Homeodomain-like
CDDcd116607.27E-18224271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKKEFPGQAP TSRLHSEMDA AAAGGGGAAK RKRSFSEDDA YLILHRYQPA TILTMLQEMG  60
KQVGAGKGID WRALVRRTST GITSAREYQM LWRHLAYGHE FVESVEPASL PLDDGSDLEC  120
EIEIVPAPGN EALAEATSFA KTIITGSSRE QTSGQRVNSE AAALNTPNEK IVRVPSDKQL  180
VPGHRLTNGT GPVSSSKQPS HTGSSPDPLD PNGHPKKKKK PKPWSREEDM ELGAGVQKHG  240
EGNWMEILHK YKFDSSRTHL QLQQRWALIC KRQGSTKPAT PKIPNLMSEE LKAAQKAFSL  300
AIGTTRSSTL RPGGVPHHNP MVTTTTPEVK SVTAPSPLPV PVHVVPVPVP VQPVQVQLPP  360
PQLHQAPAQS APPPPKVSNA SNKSRNNSKK QVAQSIPVNG PLSIQEAALA AGGRIAEPSV  420
ATNFLKAAQS TKAVHIRSRG TGSSKSSTGS KTPTVAGEPG TQLGSDQHLE LQSTGGPSQV  480
LTAHATEQVH NVSEVAGVNP LGQSTGVHLS ETKKALNTTP VSGSSDKMEI DDNSNYFAVT  540
MEDLFPEDVK QEDVQDPKIE EAIDPKDADM LEFDRFVAQG CLNKDNVDKS KAAKIAPEAQ  600
SVIGSQKKQL KTLPTVGKSN PVFAGPPATA KKTKAPVPQG GMSSGIVGVL NRSLGGKAPA  660
PATTGTQSTV QKQQSMSSKG NLLVPKNVAP GTVTPANNRA NTAVNGASKV NPPASQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220PKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLA0A0D9YTI20.0A0A0D9YTI2_9ORYZ; Uncharacterized protein
STRINGOGLUM02G20470.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-39MYB_related family protein