PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G18720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24786.9 Da PI: 4.6047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a++ ++g OGLUM02G18720.1 35 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 84 588******.**********843...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-31 | 35 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.285 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-10 | 35 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.32E-26 | 36 | 93 | No hit | No description |
PRINTS | PR00367 | 1.2E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDFYFFSSSA PAPEKKTRRR QQREQEGGGG GNEARYLGVR RRPWGRYAAE IRDPATKERH 60 WLGTFDTAEE AAVAYDRAAR TIRGAAARTN FAYPDLPPGS SLTPYLSPDL SADDLHRHYY 120 GAGAGADTQT AAAAALPAPA QPAHGGDAQE MAYGGGGGQN VGGVFDVVGG GGGAAWCDAS 180 ELEFGGYDDA GASAAAAAVY FEEGYVHSPM FSPMPAADEV AADGFQLGGS SSSSYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 28 | 91 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879251.1 | 1e-111 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A0D9YSX9 | 1e-167 | A0A0D9YSX9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G18720.1 | 1e-168 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 3e-22 | ERF family protein |