PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G11890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 448aa    MW: 49979.6 Da    PI: 7.9837
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G11890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.6e-16116155140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  OGLUM02G11890.1 116 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 155
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.07437156IPR005172CRC domain
SMARTSM011140.224771IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.5E-54768IPR005172CRC domain
SMARTSM011147.6E-18116157IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-12119154IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC  60
HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG  120
CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN  180
FALNGATGSL GYKSSPVRRK KYQENSLGEQ ILPEAQFQPL ASSCTGFGGD IASNYQSKSS  240
EMIYRSPLAN TIPLIEVNDL VKNALVACRK APEAFLTKAG NKVEMQAEKQ YQTNDEINND  300
KTKEQNLKEA SLKDIQNKAC IDRQNINGTE PHLANSFKDS RPASPGTQAL MCDEMDTTFG  360
NEDYRSPFVV PSRDQDISEL NADQERIVLT GLRDYLRVLI TRGNINEPNG RCHSNQILVR  420
DSNGIGFPEA SWSNNCFFPR QIYVFQLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-204716625133Protein lin-54 homolog
5fd3_B7e-204716625133Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047710.0AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D9YQC30.0A0A0D9YQC3_9ORYZ; Uncharacterized protein
STRINGOGLUM02G11890.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-71Tesmin/TSO1-like CXC domain-containing protein