PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G10770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 481aa MW: 52248.3 Da PI: 9.8849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.8e-51 | 10 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OGLUM02G10770.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQEEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 102 69****************************.9***************943444442456*********************************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl OGLUM02G10770.1 103 IFLGsgGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141 **98778888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-58 | 8 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.396 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGSGGG TRIGLRKTLV 120 FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE 180 DELRYQLLHG AGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASADAAP 240 CGGGGGGHVA VASMNPLDAA GCGSQNMMTM KMAATSGGEM LLMSGGGVDG GRFGAAADWS 300 ILDKLLASHQ NLDQLFHGKV AGAHQQQQQM AMDAASSLQR LPFHHYLGLE AADLLKNPRS 360 LQFSIHSDPV HSQSPTVQSQ TESHRRTIPH LLIGRRRRGA KPLSPPRCGA KPPPPPGPIA 420 SSPSRHIAAV GATHAGSAAP HRLLAPSRAT SPPPGQANQR RRRGAPSPPR LPHRQAPRFD 480 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 8 | 167 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 8 | 167 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 8 | 167 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 8 | 167 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-50 | 8 | 167 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 8 | 167 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 397 | RTIPHLLIGRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063943 | 0.0 | AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence. | |||
GenBank | AK101280 | 0.0 | AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624882.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_025878787.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-107 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0D9YPZ5 | 0.0 | A0A0D9YPZ5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G10770.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 4e-84 | NAC family protein |
Publications ? help Back to Top | |||
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