PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G09200.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 347aa MW: 37286.6 Da PI: 9.9252

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G09200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.3e-17	178	211	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + OGLUM02G09200.1 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	6.18E-13	169	212	No hit	No description
SMART	SM00401	1.1E-16	172	223	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.268	176	208	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.2E-14	176	211	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.60E-12	177	205	No hit	No description
PROSITE pattern	PS00344	0	178	203	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.6E-15	178	211	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR 60 QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN 120 GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD 180 CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AVAPVSNKPA 240 ARKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAREV VAAAPKDQDN VIVVGGENAA 300 ATSMPAQNPI SKAAAAASPA FFHGLPRDEI TDAAMLLMTL SCGLVHS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR  60
QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN  120
GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD  180
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AVAPVSNKPA  240
ARKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAREV VAAAPKDQDN VIVVGGENAA  300
ATSMPAQNPI SKAAAAASPA FFHGLPRDEI TDAAMLLMTL SCGLVHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK099607	0.0	AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625859.1	0.0	protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
Swissprot	Q6YW48	0.0	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A0D9YPF0	0.0	A0A0D9YPF0_9ORYZ; Uncharacterized protein
STRING	OGLUM02G09200.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	1e-16	GATA family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]