PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07480.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 289aa    MW: 31865.7 Da    PI: 9.5996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.4e-1721112998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +++  l lp +fa+e +g+++e ++ +l           r W+vk+     +g+ +l++GW +F++a+gL++gD +vF++dg   f  +v+v
  OGLUM02G07480.1  21 PGSSRTKLKLPDEFARELEGEERELRDAKLLVAGVgrrrrgRMWDVKV--VADDGGAYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TVTV 110
                      44556669**********88888777777654222334444*******..999999**************************998888..8888 PP

                      E- CS
               B3  97 fr 98 
                      f+
  OGLUM02G07480.1 111 FD 112
                      87 PP
2B350.92.8e-161872571786
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       +p +f e+hg+  +e  +++    +grsW+v+l++    r +++r vl+ GW +F+ +ngL +gD++ F+  +
  OGLUM02G07480.1 187 NVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 257
                      57999*****998665..455.45599*******998887777788************************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2012112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1812112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.14313114IPR003340B3 DNA binding domain
CDDcd100173.58E-1313112No hitNo description
SMARTSM010191.7E-1215114IPR003340B3 DNA binding domain
PfamPF023624.6E-1422112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-24145283IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014148283IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041188283IPR003340B3 DNA binding domain
PfamPF023621.6E-13188257IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14188257IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-12188254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR  60
GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA  120
YHDAAGSGSS SDYDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA  180
AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC  240
ADNGLAVGDT CFFRALRSAG SGAGDVDDGD GDHVLSVTVH KADGGDPLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RPRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.16e-95B3 domain-containing protein Os03g0212300
SwissprotQ10Q266e-96Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0D9YNS20.0A0A0D9YNS2_9ORYZ; Uncharacterized protein
STRINGOGLUM02G07480.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]