PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G04370.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Whirly | ||||||||
Protein Properties | Length: 270aa MW: 29448.5 Da PI: 10.4004 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 182.1 | 1e-56 | 94 | 231 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 v+k+kaal++++++p+f++l+sg +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+ OGLUM02G04370.2 94 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 187 9********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+ OGLUM02G04370.2 188 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 231 *****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.9E-72 | 83 | 250 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.37E-75 | 85 | 270 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.4E-57 | 94 | 228 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAHSLMAVGP RRLDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRLSVGN 60 ATAAESQGQR CSASPASSPP PENTSGRKFA SYTVFKGKAA LSMQPILPSF SKLESGGSRV 120 NKNGSVMLTF FPAVGQRKYD YSKKQLFALS PTEVGSLISL GPAESCEFFH DPSMKSSHEG 180 QVKKSLSVTP LGNDSGYFLN ITVLNNLQKT TERLSLPISK AEFTVMRTAL SFALPHILGW 240 DQALTNHQPS PSPASKPRVE RPHPDSEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 7e-72 | 85 | 247 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 7e-72 | 85 | 247 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 7e-72 | 85 | 247 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 7e-72 | 85 | 247 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061569 | 0.0 | AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence. | |||
GenBank | AK099479 | 0.0 | AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence. | |||
GenBank | AK104768 | 0.0 | AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence. | |||
GenBank | CT828510 | 0.0 | CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627387.1 | 1e-136 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 3e-72 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0D9YMK9 | 0.0 | A0A0D9YMK9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G04370.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 8e-74 | WHIRLY 2 |