PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G03560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 248aa MW: 26392.8 Da PI: 8.9373 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 4.9e-17 | 156 | 193 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kg++ OGLUM02G03560.1 156 CHHCGISAvsTPMMRRGPDGPRTLCNACGLMWANKGTM 193 *****99999*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.2E-7 | 20 | 55 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.794 | 20 | 55 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.5E-10 | 23 | 54 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.6E-16 | 81 | 123 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.384 | 81 | 123 | IPR010402 | CCT domain |
SMART | SM00401 | 1.9E-11 | 150 | 203 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.288 | 150 | 198 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-12 | 154 | 206 | No hit | No description |
CDD | cd00202 | 4.05E-15 | 155 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-16 | 155 | 196 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 6.4E-15 | 156 | 193 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 156 | 183 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES VSAERVQAVL LLLGGRELAP 60 GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF 120 TSSKSKAEEA TSAITSSEGS PNWGAVEGRP PSAAECHHCG ISAVSTPMMR RGPDGPRTLC 180 NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE ATGVEQHNSA VEEAVSAANG 240 HESQSGVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068931 | 0.0 | AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence. | |||
GenBank | EU847015 | 0.0 | EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622990.1 | 0.0 | GATA transcription factor 17 isoform X1 | ||||
Swissprot | Q6Z433 | 0.0 | GAT17_ORYSJ; GATA transcription factor 17 | ||||
TrEMBL | A0A0D9YMA1 | 0.0 | A0A0D9YMA1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NX94 | 0.0 | I1NX94_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G03560.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORGLA02G0035000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-65 | ZIM-like 1 |
Publications ? help Back to Top | |||
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