PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G03100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 465aa MW: 51569.5 Da PI: 5.6572 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.3 | 7.3e-33 | 263 | 317 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av++L G+ekAtPk +l+lmkv+gLt++h+kSHLQkYRl OGLUM02G03100.1 263 KPRLRWTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRL 317 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.818 | 260 | 320 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 261 | 317 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-31 | 262 | 318 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-25 | 263 | 318 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-9 | 265 | 316 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-22 | 351 | 397 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSTQSAIAVK QFSGPDKIAQ AYTVPQPSAH VLSNANYDLC GSTNSTSLSC AIQSSNIKTE 60 SISSSSLPKI LPFSTDSNGE SSLSRMSQAE FSDPILSSSS TFCTSLYTSS PMNSGSCRKT 120 GYLPFLPQPP KCEQQENSAG QSSSSLMLLD ADLRNSGHAD DEHTDDLKDF LNLSSDCSFH 180 GKCSAMAYNE QMEFQFLSEQ LGIAISNNEE SPRLDDIYDR PPQLMSLPVS SCSDQEDLQD 240 ARSPAKVQLS SSRSSSGTAS CNKPRLRWTP ELHERFVDAV NKLEGPEKAT PKGVLKLMKV 300 EGLTIYHIKS HLQKYRLAKY LPETKEDKKQ EEKKTKSVAN GNDHAKKKSA QMAEALRMQM 360 EVQKQLHEQL EVQRQLQLRI EEHARYLQKI LEEQQKARES ISSMTSTTEG ESPEFAPMEK 420 TEDKAETSSA PLSKCRITDT DAECHSKVDN KKTKPQADLE MVHDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-26 | 263 | 320 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065704 | 0.0 | AK065704.1 Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627390.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_015627391.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Swissprot | Q6YXZ4 | 0.0 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A0D9YM35 | 0.0 | A0A0D9YM35_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G03100.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 3e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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