PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G03100.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 465aa MW: 51569.5 Da PI: 5.6572

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G03100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.3e-33	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av++L G+ekAtPk +l+lmkv+gLt++h+kSHLQkYRl OGLUM02G03100.1 263 KPRLRWTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRL 317 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.818	260	320	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	261	317	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-31	262	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-25	263	318	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-9	265	316	IPR001005	SANT/Myb domain
Pfam	PF14379	6.2E-22	351	397	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MSTQSAIAVK QFSGPDKIAQ AYTVPQPSAH VLSNANYDLC GSTNSTSLSC AIQSSNIKTE 60 SISSSSLPKI LPFSTDSNGE SSLSRMSQAE FSDPILSSSS TFCTSLYTSS PMNSGSCRKT 120 GYLPFLPQPP KCEQQENSAG QSSSSLMLLD ADLRNSGHAD DEHTDDLKDF LNLSSDCSFH 180 GKCSAMAYNE QMEFQFLSEQ LGIAISNNEE SPRLDDIYDR PPQLMSLPVS SCSDQEDLQD 240 ARSPAKVQLS SSRSSSGTAS CNKPRLRWTP ELHERFVDAV NKLEGPEKAT PKGVLKLMKV 300 EGLTIYHIKS HLQKYRLAKY LPETKEDKKQ EEKKTKSVAN GNDHAKKKSA QMAEALRMQM 360 EVQKQLHEQL EVQRQLQLRI EEHARYLQKI LEEQQKARES ISSMTSTTEG ESPEFAPMEK 420 TEDKAETSSA PLSKCRITDT DAECHSKVDN KKTKPQADLE MVHDE

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MSTQSAIAVK QFSGPDKIAQ AYTVPQPSAH VLSNANYDLC GSTNSTSLSC AIQSSNIKTE  60
SISSSSLPKI LPFSTDSNGE SSLSRMSQAE FSDPILSSSS TFCTSLYTSS PMNSGSCRKT  120
GYLPFLPQPP KCEQQENSAG QSSSSLMLLD ADLRNSGHAD DEHTDDLKDF LNLSSDCSFH  180
GKCSAMAYNE QMEFQFLSEQ LGIAISNNEE SPRLDDIYDR PPQLMSLPVS SCSDQEDLQD  240
ARSPAKVQLS SSRSSSGTAS CNKPRLRWTP ELHERFVDAV NKLEGPEKAT PKGVLKLMKV  300
EGLTIYHIKS HLQKYRLAKY LPETKEDKKQ EEKKTKSVAN GNDHAKKKSA QMAEALRMQM  360
EVQKQLHEQL EVQRQLQLRI EEHARYLQKI LEEQQKARES ISSMTSTTEG ESPEFAPMEK  420
TEDKAETSSA PLSKCRITDT DAECHSKVDN KKTKPQADLE MVHDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065704	0.0	AK065704.1 Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627390.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_015627391.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	0.0	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0D9YM35	0.0	A0A0D9YM35_9ORYZ; Uncharacterized protein
STRING	OGLUM02G03100.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	3e-66	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]