PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G02840.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 721aa MW: 75953.2 Da PI: 5.7973

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G02840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	480	531	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ OGLUM02G02840.1 480 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 531 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.552	470	551	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	483	531	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-19	605	680	No hit	No description
SMART	SM00666	1.4E-17	613	709	IPR000270	PB1 domain
PROSITE profile	PS51745	16.197	613	709	IPR000270	PB1 domain
CDD	cd06407	1.34E-36	614	696	No hit	No description
Pfam	PF00564	5.7E-12	614	686	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.1E-22	614	680	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MERVLGGFNL LLQRGGAAGD RGSEGGGGGS PGTEEEEAAV AVKQRIARAL RLYKEAAGGG 60 GWMVQVWAPA RDGARRVLAT RGQPFVLASQ CHRLFQYRTV SLTRVFPVGG AAAADEQGLP 120 ARAFDAGAPE WTPNVQCYGS GEYARISYAL IYDIQGSLAL PILDPDDASS PLAVLELVTT 180 APLLRVSGEV ANLCNALQAV SLRGAGICNS VAEIVNRDAT RAAMAEVSEL LTTVCEAHKL 240 PLAQTWVRCR SCGGGGEATE KAALTTAGAP FHLAAGADAR GFRDACVEHH LRRGQGLVGS 300 TAAAAAAARA PGGGLCADVA RCSKDDYPLA HYAGMYGLAG CLVLRAELSA AAMADAAGGG 360 DEEDCVVLEL FLPPDCTGVV EQKAAVDAIS ATIKQCSGNL KAIVISNLDD LFLDTMADGD 420 QQLRHEMDDL GDDQRCSDEE DLQLLENTNI GELNIHNEDQ IRNEDPTSQV GKNKTRRGKA 480 EKSVTLEELQ KHFSGSLKDA ARSLGVCPTT MKRICRQHGI PRWPFRKISK VNRSLDKMKR 540 VMESVNCSPS PPVAMLMPAR PALLLPPPPP PPRPCLSSTV GETSSHGSCQ APPPHAKTAL 600 QKPPSWCSNG DGVVTIKASH RGDIIRFRVP CSAGVTAVKA EVAKRLSLDA GAFDVKYLDD 660 DHEWVLLSCD ADFQECLDVV PALPSMSVTA RSGSGAAAPV VVRLMVQEVA DNIGSSCASS 720 D

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MERVLGGFNL LLQRGGAAGD RGSEGGGGGS PGTEEEEAAV AVKQRIARAL RLYKEAAGGG  60
GWMVQVWAPA RDGARRVLAT RGQPFVLASQ CHRLFQYRTV SLTRVFPVGG AAAADEQGLP  120
ARAFDAGAPE WTPNVQCYGS GEYARISYAL IYDIQGSLAL PILDPDDASS PLAVLELVTT  180
APLLRVSGEV ANLCNALQAV SLRGAGICNS VAEIVNRDAT RAAMAEVSEL LTTVCEAHKL  240
PLAQTWVRCR SCGGGGEATE KAALTTAGAP FHLAAGADAR GFRDACVEHH LRRGQGLVGS  300
TAAAAAAARA PGGGLCADVA RCSKDDYPLA HYAGMYGLAG CLVLRAELSA AAMADAAGGG  360
DEEDCVVLEL FLPPDCTGVV EQKAAVDAIS ATIKQCSGNL KAIVISNLDD LFLDTMADGD  420
QQLRHEMDDL GDDQRCSDEE DLQLLENTNI GELNIHNEDQ IRNEDPTSQV GKNKTRRGKA  480
EKSVTLEELQ KHFSGSLKDA ARSLGVCPTT MKRICRQHGI PRWPFRKISK VNRSLDKMKR  540
VMESVNCSPS PPVAMLMPAR PALLLPPPPP PPRPCLSSTV GETSSHGSCQ APPPHAKTAL  600
QKPPSWCSNG DGVVTIKASH RGDIIRFRVP CSAGVTAVKA EVAKRLSLDA GAFDVKYLDD  660
DHEWVLLSCD ADFQECLDVV PALPSMSVTA RSGSGAAAPV VVRLMVQEVA DNIGSSCASS  720
D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627710.1	0.0	protein NLP3-like
TrEMBL	A0A0D9YM05	0.0	A0A0D9YM05_9ORYZ; Uncharacterized protein
STRING	OGLUM02G02840.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-109	Nin-like family protein