PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G02370.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 687aa    MW: 77093.5 Da    PI: 7.1548
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822171.83.7e-53532031141
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                      gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e+
  OGLUM02G02370.1  53 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVET 146
                      68999**********************************************************************998999************* PP

           DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvls 141
                      ++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++ +v+s
  OGLUM02G02370.1 147 PSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDSVSS 203
                      *99899*********************************998666655544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-4954207IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.806.9E-168212641IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.36E-170212680IPR017853Glycoside hydrolase superfamily
PfamPF013734.8E-81225590IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50238252IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50259277IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50372394IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50445464IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50479495IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50496507IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50514537IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-50552574IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADPSPS PAAPPPRRRG GGGGGGERER  60
EREKERTKLR ERHRRAITSR MLSGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT  120
FRASSQPLHP PTPQSPGIFH VNSVETPSFT SVLNSYAIGT PLDSQASMLQ TDDSLSPSSL  180
DSVVVADQSI KNEKYGNSDS VSSLNCLENH QMGIINSHCQ LIDPEGIRAE LMHLKSLNVD  240
GVIVDCWWGI VEAWIPHKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET GSGGVSLPKW  300
VMEIAQENQD VFFTDREGRR NMECLSWGID KERVLRGRTG IEAYFDFMRS FHMEFRNLTE  360
EGLISAIEIG LGVSGELKYP SCPERMGWRY PGIGEFQCYD RYMQKNLRQA ALSRGHLFWA  420
RGPDNAGYYN SRPHETGFFC DGGDYDSYYG RFFLNWYSGI LIDHVDQVLS LATLAFDGVE  480
TVVKIPSIYW WYRTASHAAE LTAGFYNPTN RDGYSPVFRM LKKHSVILKF VCYGPEFTIQ  540
ENNEAFADPE GLTWQVMNAA WDHGLSISVE SALPCLDGEM YSQILDTAKP RHDPDRHHVS  600
FFAYRQLPSF LLQRDVCFSE LGNFVKCMHD GSLIKIVVRV RIIIAHQSGS SALDVLMQRL  660
TVLCIRGVST YPIKIIRSRY LTTVIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-1171986293442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D9YLT10.0A0A0D9YLT1_9ORYZ; Beta-amylase
STRINGOGLUM02G02370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]