PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G02260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 543aa MW: 58803.9 Da PI: 6.0214 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 118 | 171 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ OGLUM02G02260.1 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.601 | 114 | 174 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-29 | 114 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-14 | 117 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-22 | 118 | 173 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 119 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MKEKEVLVEI VEDDELKRSI GRNQLDLNEE VMDVESEEGE VGDDEDDEDE EDDDDDDDGG 60 STTDVAGSRS SSNNSSTNNV SESKLKGDKD SGGGRLEGIN GGEQRVPSVR QYNRSKLPRL 120 RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHEGRQ 180 IRGAIASVFS PMDFHLMRGD LRFHDMLLQR AAALSSSRQE HGGFFSSRSG GGGGGLPPEA 240 SRLYGLLQHR QSPAMATMQT FDFKNSSFRN QEWSFSFNHQ RKETMNPSSS SSTTAAIRRW 300 PSAAGAVADV AGERQRLAER FGYYTGNGGA SSTSLPLITR AAMAAPPPMF AAAVAPPGRD 360 HHRLPFGWHA GGGGGGNKNR SSSDPVVIDE ALDSRRLEHQ QKHVEQPRTT LTTTTTPAGK 420 RPPEWSPPDL QLTLSPTTAP AAADGGGAKR SKTSTTTTNT TAAISGEQEA EKNMDRCKNK 480 LSISLSLSPP AAAAAAANFS SMDLSMEQQK QKQEKTTIGS SEEEAGDLGQ STLDLTMSIR 540 ALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-18 | 119 | 173 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 119 | 173 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 119 | 173 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 119 | 173 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005613 | 0.0 | AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625548.1 | 0.0 | uncharacterized protein LOC107275964 | ||||
TrEMBL | A0A0D9YLR7 | 0.0 | A0A0D9YLR7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G02260.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-34 | G2-like family protein |