PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G49890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 406aa MW: 44700.5 Da PI: 4.6497 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.4e-31 | 160 | 216 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h OGLUM01G49890.1 160 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 216 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.164 | 154 | 219 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.3E-29 | 157 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 158 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-36 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-25 | 160 | 216 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MEGAMQESRE YWRDGGDVVG EELLREILDE TAAVHSNSNS NSNSNSKEAE EEEEDEREYF 60 AAAAADEQLQ VEAPCGRRRR ESMVNKLIST VYSGPTISDI ESALSFTAAG DHQLLADGHN 120 FAASSCSPVV FSPEKTLSKT MENKYTLKMK SCGNNGGLAD DGYKWRKYGQ KSIKNSPNPR 180 SYYRCTNPRC NAKKQVERAV DEPDTLIVTY EGLHLHYTYS HFLHSTSSSS SSTTTQQQLQ 240 PQPQMMTNCK KKPKLHLHPL LHDDPPPPPP EMTTMMIMQS FSIQQQQHDD DQLLQPAADH 300 LMVQAPPDGC YIDGSSSSGL MMSLDDDEQA AGAGGLLEDV VPLLVRRPPP PICNNNNYYY 360 SPATTCTSDN EYGSSASASP SSSVSVSSWT TPMSPCIDMA ILSNIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 158 | 216 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 158 | 216 | 16 | 74 | Probable WRKY transcription factor 4 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110625 | 0.0 | AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence. | |||
GenBank | AY341842 | 0.0 | AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds. | |||
GenBank | AY870605 | 0.0 | AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641374.1 | 0.0 | probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0D9YKP8 | 0.0 | A0A0D9YKP8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G49890.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 6e-41 | WRKY DNA-binding protein 49 |